Checkstyle Results

The following document contains the results of Checkstyle. 

Summary

Files Infos  Warnings  Errors 
96 0 0 2384

Files

Files
org/galaxy/services/AbstractWebServer.java 0 0 15
org/galaxy/services/GrizzlyStarter.java 0 0 14
org/galaxy/services/Mappings.java 0 0 3
org/galaxy/services/RemoteProxy.java 0 0 22
org/galaxy/services/SecuredWebServer.java 0 0 51
org/galaxy/services/ServiceUnavailableException.java 0 0 14
org/galaxy/services/SimpleWebServer.java 0 0 14
org/galaxy/services/URLBasedContentNegotiationFilter.java 0 0 7
org/galaxy/services/WebServer.java 0 0 13
org/galaxy/services/annotation/Autowire.java 0 0 2
org/galaxy/services/annotation/package-info.java 0 0 1
org/galaxy/services/auth/AuthenticationException.java 0 0 11
org/galaxy/services/auth/AuthenticationExceptionMapper.java 0 0 6
org/galaxy/services/auth/SecurityFilter.java 0 0 46
org/galaxy/services/beans/internal/AbstractAccountEntityBean.java 0 0 39
org/galaxy/services/beans/internal/CabinetBean.java 0 0 44
org/galaxy/services/beans/internal/CapabilityBean.java 0 0 3
org/galaxy/services/beans/internal/CollectionBean.java 0 0 61
org/galaxy/services/beans/internal/CommentBean.java 0 0 36
org/galaxy/services/beans/internal/CommentsBean.java 0 0 11
org/galaxy/services/beans/internal/CrawlerSystemBean.java 0 0 24
org/galaxy/services/beans/internal/DataSourceBean.java 0 0 54
org/galaxy/services/beans/internal/DataSourceTaskReportBean.java 0 0 68
org/galaxy/services/beans/internal/DiskUsageBean.java 0 0 15
org/galaxy/services/beans/internal/FacadeBean.java 0 0 29
org/galaxy/services/beans/internal/GraphEdgeBean.java 0 0 21
org/galaxy/services/beans/internal/GroupBean.java 0 0 6
org/galaxy/services/beans/internal/HitBean.java 0 0 58
org/galaxy/services/beans/internal/IndexSettingsBean.java 0 0 68
org/galaxy/services/beans/internal/InternalBean.java 0 0 13
org/galaxy/services/beans/internal/InternalBeanFactory.java 0 0 64
org/galaxy/services/beans/internal/ListableFacadeBean.java 0 0 27
org/galaxy/services/beans/internal/PhraseBean.java 0 0 15
org/galaxy/services/beans/internal/PreferenceBean.java 0 0 21
org/galaxy/services/beans/internal/QueryBean.java 0 0 30
org/galaxy/services/beans/internal/ResourceBean.java 0 0 74
org/galaxy/services/beans/internal/SearchResultBean.java 0 0 48
org/galaxy/services/beans/internal/SharingBean.java 0 0 26
org/galaxy/services/beans/internal/TaskInfoBean.java 0 0 104
org/galaxy/services/beans/internal/TimelineBean.java 0 0 23
org/galaxy/services/beans/internal/TimelineEntryBean.java 0 0 27
org/galaxy/services/beans/internal/UserBean.java 0 0 33
org/galaxy/services/beans/internal/package-info.java 0 0 2
org/galaxy/services/package-info.java 0 0 1
org/galaxy/services/params/IDSet.java 0 0 9
org/galaxy/services/params/Listing.java 0 0 39
org/galaxy/services/params/UUIDParam.java 0 0 7
org/galaxy/services/params/package-info.java 0 0 1
org/galaxy/services/providers/AbstractParameterProvider.java 0 0 18
org/galaxy/services/providers/BeanFactoryProvider.java 0 0 3
org/galaxy/services/providers/ListingParamProvider.java 0 0 8
org/galaxy/services/providers/RemoteProxyProvider.java 0 0 3
org/galaxy/services/providers/SearchQueryProvider.java 0 0 9
org/galaxy/services/providers/StartupListener.java 0 0 6
org/galaxy/services/providers/distant/AccountsManagerProvider.java 0 0 7
org/galaxy/services/providers/distant/AutoCompleterProvider.java 0 0 7
org/galaxy/services/providers/distant/BoboConnectorProvider.java 0 0 7
org/galaxy/services/providers/distant/CollectionsManagerProvider.java 0 0 6
org/galaxy/services/providers/distant/ConnectorFacadeProvider.java 0 0 6
org/galaxy/services/providers/distant/FilePathResolverProvider.java 0 0 7
org/galaxy/services/providers/distant/FileSystemConnectorProvider.java 0 0 7
org/galaxy/services/providers/distant/PreferencesProvider.java 0 0 7
org/galaxy/services/providers/distant/SearchProvider.java 0 0 4
org/galaxy/services/providers/distant/WaybackProvider.java 0 0 9
org/galaxy/services/providers/distant/package-info.java 0 0 1
org/galaxy/services/providers/exception/AbstractExceptionMapper.java 0 0 29
org/galaxy/services/providers/exception/AlreadyExistsExceptionMapper.java 0 0 4
org/galaxy/services/providers/exception/ConnectorExceptionMapper.java 0 0 9
org/galaxy/services/providers/exception/DataExceptionMapper.java 0 0 5
org/galaxy/services/providers/exception/DefaultExceptionMapper.java 0 0 5
org/galaxy/services/providers/exception/NotFoundExceptionMapper.java 0 0 6
org/galaxy/services/providers/exception/RemoteExceptionMapper.java 0 0 4
org/galaxy/services/providers/exception/SearchQueryExceptionMapper.java 0 0 7
org/galaxy/services/providers/exception/ServiceUnavailabilityMapper.java 0 0 4
org/galaxy/services/providers/exception/UnsupportedTaskExceptionMapper.java 0 0 3
org/galaxy/services/providers/exception/WebApplicationExceptionMapper.java 0 0 7
org/galaxy/services/providers/exception/package-info.java 0 0 1
org/galaxy/services/providers/package-info.java 0 0 1
org/galaxy/services/resources/AbstractService.java 0 0 7
org/galaxy/services/resources/AccountsService.java 0 0 179
org/galaxy/services/resources/AutoCompleteService.java 0 0 9
org/galaxy/services/resources/BoboConnectorService.java 0 0 52
org/galaxy/services/resources/CollectionService.java 0 0 135
org/galaxy/services/resources/ConnectorFacadeService.java 0 0 23
org/galaxy/services/resources/GenericService.java 0 0 6
org/galaxy/services/resources/PreferencesService.java 0 0 65
org/galaxy/services/resources/SearchService.java 0 0 22
org/galaxy/services/resources/StatusService.java 0 0 6
org/galaxy/services/resources/WaybackService.java 0 0 104
org/galaxy/services/resources/WebGraphService.java 0 0 15
org/galaxy/services/resources/package-info.java 0 0 1
org/galaxy/services/utils/ShaPasswordEncoder.java 0 0 25
org/galaxy/services/utils/beans/BeanFactory.java 0 0 194
org/galaxy/services/utils/beans/BidirectionalConverter.java 0 0 9
org/galaxy/services/utils/beans/TaskDataConverter.java 0 0 11
org/galaxy/services/utils/beans/package-info.java 0 0 1

Rules

Rules Violations Severity
JavadocPackage
  • allowLegacy: "true"
2  Error
NewlineAtEndOfFile 37  Error
Translation 0  Error
FileLength 0  Error
FileTabCharacter
  • eachLine: "true"
0  Error
RegexpSingleline
  • message: "Line has trailing spaces."
  • format: "\s+$"
184  Error
JavadocMethod 613  Error
JavadocType 12  Error
JavadocVariable 58  Error
JavadocStyle 5  Error
ConstantName 11  Error
LocalFinalVariableName 0  Error
LocalVariableName 4  Error
MemberName 0  Error
MethodName 0  Error
PackageName 0  Error
ParameterName 0  Error
StaticVariableName 0  Error
TypeName 0  Error
AvoidStarImport 0  Error
IllegalImport 0  Error
RedundantImport 0  Error
UnusedImports 24  Error
LineLength 310  Error
MethodLength 0  Error
ParameterNumber 0  Error
EmptyForIteratorPad 0  Error
MethodParamPad 0  Error
NoWhitespaceAfter 0  Error
NoWhitespaceBefore 0  Error
OperatorWrap 0  Error
ParenPad 11  Error
TypecastParenPad 0  Error
WhitespaceAfter 5  Error
WhitespaceAround 8  Error
ModifierOrder 1  Error
RedundantModifier 8  Error
AvoidNestedBlocks 0  Error
EmptyBlock 1  Error
LeftCurly 18  Error
NeedBraces 0  Error
RightCurly 0  Error
AvoidInlineConditionals 1  Error
EmptyStatement 0  Error
EqualsHashCode 0  Error
HiddenField 18  Error
IllegalInstantiation 0  Error
InnerAssignment 0  Error
MagicNumber 13  Error
MissingSwitchDefault 0  Error
RedundantThrows 7  Error
SimplifyBooleanExpression 0  Error
SimplifyBooleanReturn 0  Error
DesignForExtension 519  Error
FinalClass 0  Error
HideUtilityClassConstructor 0  Error
InterfaceIsType 0  Error
VisibilityModifier 20  Error
ArrayTypeStyle 1  Error
FinalParameters 488  Error
TodoComment 0  Error
UpperEll 5  Error

Details

org/galaxy/services/AbstractWebServer.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 85). 17
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 24
Missing a Javadoc comment. 26
Variable 'protocol' must be private and have accessor methods. 58
Variable 'host' must be private and have accessor methods. 66
Variable 'port' must be private and have accessor methods. 74
Variable 'path' must be private and have accessor methods. 82
Parameter parameters should be final. 89
Method 'initialize' is not designed for extension - needs to be abstract, final or empty. 105
Missing a Javadoc comment. 110
Method 'getProtocol' is not designed for extension - needs to be abstract, final or empty. 112
Method 'getHost' is not designed for extension - needs to be abstract, final or empty. 117
Method 'getPort' is not designed for extension - needs to be abstract, final or empty. 122
Method 'getPath' is not designed for extension - needs to be abstract, final or empty. 127

org/galaxy/services/GrizzlyStarter.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 21
Method 'processCommandLineArguments' is not designed for extension - needs to be abstract, final or empty. 40
Line is longer than 80 characters (found 107). 45
Name 'opt_host' must match pattern '^[a-z][a-zA-Z0-9]*$'. 45
Line is longer than 80 characters (found 107). 46
Name 'opt_port' must match pattern '^[a-z][a-zA-Z0-9]*$'. 46
Line is longer than 80 characters (found 107). 47
Name 'opt_path' must match pattern '^[a-z][a-zA-Z0-9]*$'. 47
Line is longer than 80 characters (found 100). 48
Name 'opt_secured' must match pattern '^[a-z][a-zA-Z0-9]*$'. 48
Method 'startup' is not designed for extension - needs to be abstract, final or empty. 75
Line is longer than 80 characters (found 115). 92
Line is longer than 80 characters (found 113). 94

org/galaxy/services/Mappings.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 81). 7
'abstract' modifier out of order with the JLS suggestions. 20

org/galaxy/services/RemoteProxy.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 18
Line has trailing spaces. 19
Missing a Javadoc comment. 21
Missing a Javadoc comment. 24
Parameter domain should be final. 36
'domain' hides a field. 36
Parameter ctx should be final. 36
'ctx' hides a field. 36
First sentence should end with a period. 73
Unused @throws tag for 'ServiceUnavailableException'. 77
Parameter clazz should be final. 81
Expected @param tag for 'clazz'. 81
Unused @throws tag for 'ServiceUnavailableException'. 96
Parameter obj should be final. 99
Parameter name should be final. 99
Expected @param tag for 'name'. 99
Missing a Javadoc comment. 106
Line has trailing spaces. 107
Missing a Javadoc comment. 108
Line has trailing spaces. 109
Line has trailing spaces. 111

org/galaxy/services/SecuredWebServer.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 30
Missing a Javadoc comment. 32
Missing a Javadoc comment. 34
Line has trailing spaces. 35
Missing a Javadoc comment. 36
Missing a Javadoc comment. 38
Line has trailing spaces. 39
Missing a Javadoc comment. 40
Missing a Javadoc comment. 42
Missing a Javadoc comment. 44
Missing a Javadoc comment. 46
Line has trailing spaces. 47
Variable 'server' must be private and have accessor methods. 56
Missing a Javadoc comment. 58
Variable 'keyStoreDirectory' must be private and have accessor methods. 58
Missing a Javadoc comment. 60
Variable 'keyStorePassword' must be private and have accessor methods. 60
Line has trailing spaces. 61
Missing a Javadoc comment. 62
Variable 'clientAuth' must be private and have accessor methods. 62
Parameter params should be final. 72
Line is longer than 80 characters (found 82). 80
Line has trailing spaces. 81
Line has trailing spaces. 85
Line is longer than 80 characters (found 89). 87
Method 'startup' is not designed for extension - needs to be abstract, final or empty. 95
'20000' is a magic number. 96
Line has trailing spaces. 117
Line has trailing spaces. 119
Line has trailing spaces. 123
Line is longer than 80 characters (found 108). 124
')' is preceded with whitespace. 124
Line is longer than 80 characters (found 139). 125
')' is preceded with whitespace. 125
Line is longer than 80 characters (found 94). 133
Line is longer than 80 characters (found 81). 136
Line has trailing spaces. 139
Line is longer than 80 characters (found 121). 139
Line has trailing spaces. 141
Line is longer than 80 characters (found 124). 143
Line is longer than 80 characters (found 87). 146
Line has trailing spaces. 149
Line is longer than 80 characters (found 170). 150
Line is longer than 80 characters (found 94). 151
Line is longer than 80 characters (found 85). 156
Line is longer than 80 characters (found 82). 158
Line is longer than 80 characters (found 118). 160
Line is longer than 80 characters (found 82). 164
Method 'stop' is not designed for extension - needs to be abstract, final or empty. 179
'20000' is a magic number. 180

org/galaxy/services/ServiceUnavailableException.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 16
Missing a Javadoc comment. 18
Parameter service should be final. 30
'service' hides a field. 30
Expected @param tag for 'service'. 30
Missing a Javadoc comment. 35
Parameter cause should be final. 35
Missing a Javadoc comment. 39
Parameter cause should be final. 39
Parameter service should be final. 39
'service' hides a field. 39
Method 'getMessage' is not designed for extension - needs to be abstract, final or empty. 44
Line has trailing spaces. 48

org/galaxy/services/SimpleWebServer.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 56
Variable 'server' must be private and have accessor methods. 63
Parameter params should be final. 75
Method 'initialize' is not designed for extension - needs to be abstract, final or empty. 85
Method 'startup' is not designed for extension - needs to be abstract, final or empty. 95
'20000' is a magic number. 96
Line is longer than 80 characters (found 136). 115
Line is longer than 80 characters (found 85). 124
Line is longer than 80 characters (found 82). 126
Line is longer than 80 characters (found 118). 128
Line is longer than 80 characters (found 82). 132
Method 'stop' is not designed for extension - needs to be abstract, final or empty. 147
'20000' is a magic number. 148

org/galaxy/services/URLBasedContentNegotiationFilter.java

Violation Message Line
File does not end with a newline. 0
Line has trailing spaces. 12
Line is longer than 80 characters (found 83). 26
Name 'defaultExtentions' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 26
Missing a Javadoc comment. 34
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 34
Line is longer than 80 characters (found 94). 44

org/galaxy/services/WebServer.java

Violation Message Line
File does not end with a newline. 0
Redundant 'public' modifier. 22
Missing a Javadoc comment. 24
Redundant 'public' modifier. 24
Line has trailing spaces. 25
Missing a Javadoc comment. 46
Redundant 'public' modifier. 46
Missing a Javadoc comment. 48
Redundant 'public' modifier. 48
Missing a Javadoc comment. 50
Redundant 'public' modifier. 50
Missing a Javadoc comment. 52
Redundant 'public' modifier. 52

org/galaxy/services/annotation/Autowire.java

Violation Message Line
'}' is not preceded with whitespace. 16
Line has trailing spaces. 20

org/galaxy/services/annotation/package-info.java

Violation Message Line
Line has trailing spaces. 3

org/galaxy/services/auth/AuthenticationException.java

Violation Message Line
File does not end with a newline. 0
Missing package-info.java file. 0
Missing a Javadoc comment. 12
Missing a Javadoc comment. 14
Parameter message should be final. 14
Parameter realm should be final. 14
'realm' hides a field. 14
Missing a Javadoc comment. 19
Parameter cause should be final. 19
Method 'getRealm' is not designed for extension - needs to be abstract, final or empty. 23
Missing a Javadoc comment. 23

org/galaxy/services/auth/AuthenticationExceptionMapper.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 96). 16
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 18
Missing a Javadoc comment. 18
Parameter e should be final. 18
Line is longer than 80 characters (found 87). 22

org/galaxy/services/auth/SecurityFilter.java

Violation Message Line
File does not end with a newline. 0
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 39
Missing a Javadoc comment. 54
Missing a Javadoc comment. 55
Should use uppercase 'L'. 55
Missing a Javadoc comment. 56
Missing a Javadoc comment. 58
Method 'filter' is not designed for extension - needs to be abstract, final or empty. 62
Parameter request should be final. 63
'400' is a magic number. 69
Line is longer than 80 characters (found 81). 74
Method 'toString' is not designed for extension - needs to be abstract, final or empty. 83
Line is longer than 80 characters (found 101). 88
Missing a Javadoc comment. 88
Parameter request should be final. 88
Line is longer than 80 characters (found 87). 91
Line is longer than 80 characters (found 96). 93
Line is longer than 80 characters (found 83). 100
Line is longer than 80 characters (found 94). 103
Line is longer than 80 characters (found 89). 108
Line is longer than 80 characters (found 93). 142
Line has trailing spaces. 145
Line is longer than 80 characters (found 94). 147
'256' is a magic number. 147
Line is longer than 80 characters (found 90). 152
Line is longer than 80 characters (found 98). 156
Line is longer than 80 characters (found 97). 164
Missing a Javadoc comment. 172
Missing a Javadoc comment. 174
Missing a Javadoc comment. 175
Missing a Javadoc comment. 176
Line is longer than 80 characters (found 81). 178
Missing a Javadoc comment. 178
'1000000l' is a magic number. 180
Should use uppercase 'L'. 180
Method 'getUserPrincipal' is not designed for extension - needs to be abstract, final or empty. 193
Method 'isUserInRole' is not designed for extension - needs to be abstract, final or empty. 198
Parameter role should be final. 199
Method 'isSecure' is not designed for extension - needs to be abstract, final or empty. 203
Method 'getAuthenticationScheme' is not designed for extension - needs to be abstract, final or empty. 208
Method 'getAuthorizedSince' is not designed for extension - needs to be abstract, final or empty. 213
Missing a Javadoc comment. 213
Method 'hasValidTimestamp' is not designed for extension - needs to be abstract, final or empty. 217
Missing a Javadoc comment. 217
'1000000l' is a magic number. 218
Should use uppercase 'L'. 218

org/galaxy/services/beans/internal/AbstractAccountEntityBean.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 99). 10
Type Javadoc comment is missing an @param <T> tag. 10
Missing a Javadoc comment. 12
Line has trailing spaces. 15
Missing a Javadoc comment. 16
Parameter instance should be final. 16
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 20
Missing a Javadoc comment. 20
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 24
Missing a Javadoc comment. 24
Parameter id should be final. 24
Method 'getName' is not designed for extension - needs to be abstract, final or empty. 28
Missing a Javadoc comment. 28
Method 'setName' is not designed for extension - needs to be abstract, final or empty. 32
Missing a Javadoc comment. 32
Parameter name should be final. 32
Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. 36
Missing a Javadoc comment. 36
Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. 40
Missing a Javadoc comment. 40
Parameter description should be final. 40
Method 'getDateCreated' is not designed for extension - needs to be abstract, final or empty. 44
Missing a Javadoc comment. 44
Method 'setDateCreated' is not designed for extension - needs to be abstract, final or empty. 48
Missing a Javadoc comment. 48
Parameter dateCreated should be final. 48
Method 'getDateModified' is not designed for extension - needs to be abstract, final or empty. 52
Missing a Javadoc comment. 52
Method 'setDateModified' is not designed for extension - needs to be abstract, final or empty. 56
Missing a Javadoc comment. 56
Parameter dateModified should be final. 56
Line has trailing spaces. 59
Method 'isPermanent' is not designed for extension - needs to be abstract, final or empty. 60
Missing a Javadoc comment. 60
Method 'setPermanent' is not designed for extension - needs to be abstract, final or empty. 64
Missing a Javadoc comment. 64
Parameter permanent should be final. 64
Line has trailing spaces. 67

org/galaxy/services/beans/internal/CabinetBean.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter id should be final. 25
Method 'getOwner' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Method 'setOwner' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Parameter owner should be final. 33
Method 'getName' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Method 'setName' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Parameter name should be final. 41
Method 'getPath' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Method 'setPath' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Parameter path should be final. 49
Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. 53
Missing a Javadoc comment. 53
Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. 57
Missing a Javadoc comment. 57
Parameter description should be final. 57
Method 'getDateCreated' is not designed for extension - needs to be abstract, final or empty. 61
Missing a Javadoc comment. 61
Method 'setDateCreated' is not designed for extension - needs to be abstract, final or empty. 65
Missing a Javadoc comment. 65
Parameter dateCreated should be final. 65
Method 'getDateModified' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Method 'setDateModified' is not designed for extension - needs to be abstract, final or empty. 73
Missing a Javadoc comment. 73
Parameter dateModified should be final. 73
Method 'getSize' is not designed for extension - needs to be abstract, final or empty. 77
Missing a Javadoc comment. 77
Method 'setSize' is not designed for extension - needs to be abstract, final or empty. 81
Missing a Javadoc comment. 81
Parameter size should be final. 81

org/galaxy/services/beans/internal/CapabilityBean.java

Violation Message Line
File does not end with a newline. 0
'{' is not preceded with whitespace. 10
Parameter instance should be final. 27

org/galaxy/services/beans/internal/CollectionBean.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 86). 12
Missing a Javadoc comment. 15
Missing a Javadoc comment. 17
Missing a Javadoc comment. 21
Parameter instance should be final. 21
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Parameter id should be final. 29
Method 'getOwner' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Method 'setOwner' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Parameter owner should be final. 37
Method 'getName' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Method 'setName' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Parameter name should be final. 45
Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. 53
Missing a Javadoc comment. 53
Parameter description should be final. 53
Method 'getDirectory' is not designed for extension - needs to be abstract, final or empty. 57
Missing a Javadoc comment. 57
Method 'setDirectory' is not designed for extension - needs to be abstract, final or empty. 61
Missing a Javadoc comment. 61
Parameter directory should be final. 61
Method 'getDateCreated' is not designed for extension - needs to be abstract, final or empty. 65
Missing a Javadoc comment. 65
Method 'setDateCreated' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Parameter dateCreated should be final. 69
Method 'getDateModified' is not designed for extension - needs to be abstract, final or empty. 73
Missing a Javadoc comment. 73
Method 'setDateModified' is not designed for extension - needs to be abstract, final or empty. 77
Missing a Javadoc comment. 77
Parameter dateModified should be final. 77
Method 'getDiskUsage' is not designed for extension - needs to be abstract, final or empty. 81
Missing a Javadoc comment. 81
Method 'setDiskUsage' is not designed for extension - needs to be abstract, final or empty. 85
Missing a Javadoc comment. 85
Parameter diskUsage should be final. 85
Method 'getDataSourcesCount' is not designed for extension - needs to be abstract, final or empty. 89
Missing a Javadoc comment. 89
Method 'setDataSourcesCount' is not designed for extension - needs to be abstract, final or empty. 93
Missing a Javadoc comment. 93
Parameter dataSourcesCount should be final. 93
Method 'getDocumentsCount' is not designed for extension - needs to be abstract, final or empty. 97
Missing a Javadoc comment. 97
Method 'setDocumentsCount' is not designed for extension - needs to be abstract, final or empty. 101
Missing a Javadoc comment. 101
Parameter documentsCount should be final. 101
Method 'getDocumentsIndexedCount' is not designed for extension - needs to be abstract, final or empty. 105
Missing a Javadoc comment. 105
Method 'setDocumentsIndexedCount' is not designed for extension - needs to be abstract, final or empty. 109
Missing a Javadoc comment. 109
Parameter documentsIndexedCount should be final. 109

org/galaxy/services/beans/internal/CommentBean.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 117). 8
First sentence should end with a period. 10
Parameter comment should be final. 22
Parameter comment should be final. 31
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 35
Missing a Javadoc comment. 35
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 39
Missing a Javadoc comment. 39
Parameter id should be final. 39
Method 'getResource' is not designed for extension - needs to be abstract, final or empty. 43
Missing a Javadoc comment. 43
Method 'setResource' is not designed for extension - needs to be abstract, final or empty. 47
Missing a Javadoc comment. 47
Parameter resource should be final. 47
Method 'getAuthor' is not designed for extension - needs to be abstract, final or empty. 51
Missing a Javadoc comment. 51
Method 'setAuthor' is not designed for extension - needs to be abstract, final or empty. 55
Missing a Javadoc comment. 55
Parameter author should be final. 55
Method 'getCreated' is not designed for extension - needs to be abstract, final or empty. 59
Missing a Javadoc comment. 59
Method 'setCreated' is not designed for extension - needs to be abstract, final or empty. 63
Missing a Javadoc comment. 63
Parameter created should be final. 63
Method 'getComment' is not designed for extension - needs to be abstract, final or empty. 67
Missing a Javadoc comment. 67
Method 'setComment' is not designed for extension - needs to be abstract, final or empty. 71
Missing a Javadoc comment. 71
Parameter comment should be final. 71
Missing a Javadoc comment. 75
Parameter args should be final. 75
'246l' is a magic number. 83
Should use uppercase 'L'. 83
'56465l' is a magic number. 84
Should use uppercase 'L'. 84

org/galaxy/services/beans/internal/CommentsBean.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 126). 12
First sentence should end with a period. 14
Line is longer than 80 characters (found 83). 26
Parameter comment should be final. 26
Line is longer than 80 characters (found 82). 35
Parameter comment should be final. 35
Method 'convertEntry' is not designed for extension - needs to be abstract, final or empty. 39
Parameter entry should be final. 40
Method 'convertEntry' is not designed for extension - needs to be abstract, final or empty. 44
Parameter entry should be final. 45

org/galaxy/services/beans/internal/CrawlerSystemBean.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter id should be final. 25
Method 'getName' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Method 'setName' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Parameter name should be final. 33
Method 'isAvailable' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Method 'setAvailable' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Parameter available should be final. 41
Method 'getDomain' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Method 'setDomain' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Parameter domain should be final. 49

org/galaxy/services/beans/internal/DataSourceBean.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 14
Missing a Javadoc comment. 18
Parameter instance should be final. 18
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 22
Missing a Javadoc comment. 22
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 26
Missing a Javadoc comment. 26
Parameter id should be final. 26
Method 'getOwner' is not designed for extension - needs to be abstract, final or empty. 30
Missing a Javadoc comment. 30
Method 'setOwner' is not designed for extension - needs to be abstract, final or empty. 34
Missing a Javadoc comment. 34
Parameter owner should be final. 34
Method 'getCollection' is not designed for extension - needs to be abstract, final or empty. 38
Missing a Javadoc comment. 38
Method 'setCollection' is not designed for extension - needs to be abstract, final or empty. 42
Missing a Javadoc comment. 42
Parameter collection should be final. 42
Method 'getName' is not designed for extension - needs to be abstract, final or empty. 46
Missing a Javadoc comment. 46
Method 'setName' is not designed for extension - needs to be abstract, final or empty. 50
Missing a Javadoc comment. 50
Parameter name should be final. 50
Method 'getDescription' is not designed for extension - needs to be abstract, final or empty. 54
Missing a Javadoc comment. 54
Method 'setDescription' is not designed for extension - needs to be abstract, final or empty. 58
Missing a Javadoc comment. 58
Parameter description should be final. 58
Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. 62
Missing a Javadoc comment. 62
Method 'setStatus' is not designed for extension - needs to be abstract, final or empty. 66
Missing a Javadoc comment. 66
Parameter status should be final. 66
Method 'getType' is not designed for extension - needs to be abstract, final or empty. 70
Missing a Javadoc comment. 70
Method 'setType' is not designed for extension - needs to be abstract, final or empty. 74
Missing a Javadoc comment. 74
Parameter type should be final. 74
Method 'getLastExecution' is not designed for extension - needs to be abstract, final or empty. 78
Missing a Javadoc comment. 78
Method 'setLastExecution' is not designed for extension - needs to be abstract, final or empty. 82
Missing a Javadoc comment. 82
Parameter lastExecution should be final. 82
Method 'getCreatedAt' is not designed for extension - needs to be abstract, final or empty. 86
Missing a Javadoc comment. 86
Method 'setCreatedAt' is not designed for extension - needs to be abstract, final or empty. 90
Missing a Javadoc comment. 90
Parameter createdAt should be final. 90
Method 'getMeta' is not designed for extension - needs to be abstract, final or empty. 94
Missing a Javadoc comment. 94
Method 'setMeta' is not designed for extension - needs to be abstract, final or empty. 98
Missing a Javadoc comment. 98
Parameter meta should be final. 98

org/galaxy/services/beans/internal/DataSourceTaskReportBean.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 141). 11
Missing a Javadoc comment. 13
Line has trailing spaces. 16
Missing a Javadoc comment. 17
Parameter internal should be final. 17
Missing a Javadoc comment. 21
Parameter api should be final. 21
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Parameter id should be final. 29
Method 'getSourceId' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Method 'setSourceId' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Parameter sourceId should be final. 37
Method 'getStarted' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Method 'setStarted' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Parameter started should be final. 45
Method 'getStopped' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Method 'setStopped' is not designed for extension - needs to be abstract, final or empty. 53
Missing a Javadoc comment. 53
Parameter stopped should be final. 53
Method 'getState' is not designed for extension - needs to be abstract, final or empty. 57
Missing a Javadoc comment. 57
Method 'setState' is not designed for extension - needs to be abstract, final or empty. 61
Missing a Javadoc comment. 61
Parameter state should be final. 61
Method 'getRead' is not designed for extension - needs to be abstract, final or empty. 65
Missing a Javadoc comment. 65
Method 'setRead' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Parameter read should be final. 69
Method 'getAdded' is not designed for extension - needs to be abstract, final or empty. 73
Missing a Javadoc comment. 73
Method 'setAdded' is not designed for extension - needs to be abstract, final or empty. 77
Missing a Javadoc comment. 77
Parameter added should be final. 77
Method 'getModified' is not designed for extension - needs to be abstract, final or empty. 81
Missing a Javadoc comment. 81
Method 'setModified' is not designed for extension - needs to be abstract, final or empty. 85
Missing a Javadoc comment. 85
Parameter modified should be final. 85
Method 'getUnmodified' is not designed for extension - needs to be abstract, final or empty. 89
Missing a Javadoc comment. 89
Method 'setUnmodified' is not designed for extension - needs to be abstract, final or empty. 93
Missing a Javadoc comment. 93
Parameter unmodified should be final. 93
Method 'getFiltered' is not designed for extension - needs to be abstract, final or empty. 97
Missing a Javadoc comment. 97
Method 'setFiltered' is not designed for extension - needs to be abstract, final or empty. 101
Missing a Javadoc comment. 101
Parameter filtered should be final. 101
Method 'getTaskId' is not designed for extension - needs to be abstract, final or empty. 105
Missing a Javadoc comment. 105
Method 'setTaskId' is not designed for extension - needs to be abstract, final or empty. 109
Missing a Javadoc comment. 109
Parameter taskId should be final. 109
Method 'getFetched' is not designed for extension - needs to be abstract, final or empty. 113
Missing a Javadoc comment. 113
Method 'setFetched' is not designed for extension - needs to be abstract, final or empty. 117
Missing a Javadoc comment. 117
Parameter fetched should be final. 117

org/galaxy/services/beans/internal/DiskUsageBean.java

Violation Message Line
Line has trailing spaces. 7
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getUsedSpace' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'setUsedSpace' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter usedSpace should be final. 25
Method 'getFreeSpace' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Method 'setFreeSpace' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Parameter freeSpace should be final. 33
Line has trailing spaces. 36

org/galaxy/services/beans/internal/FacadeBean.java

Violation Message Line
Line is longer than 80 characters (found 103). 17
Type Javadoc comment is missing an @param <A> tag. 17
Type Javadoc comment is missing an @param <I> tag. 17
First sentence should end with a period. 19
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 24
Variable 'internal' must be private and have accessor methods. 39
Variable 'api' must be private and have accessor methods. 46
Parameter internal should be final. 68
'internal' hides a field. 68
Expected @param tag for 'internal'. 68
Missing a Javadoc comment. 72
Parameter api should be final. 72
'api' hides a field. 72
Method 'getInternalBean' is not designed for extension - needs to be abstract, final or empty. 76
Missing a Javadoc comment. 76
'cast' is not followed by whitespace. 78
Method 'getApiBean' is not designed for extension - needs to be abstract, final or empty. 83
Missing a Javadoc comment. 83
Missing a Javadoc comment. 90
'{' should be on the previous line. 91
Missing a Javadoc comment. 97
'{' should be on the previous line. 98
Line is longer than 80 characters (found 87). 104
Method 'convertBean' is not designed for extension - needs to be abstract, final or empty. 104
Missing a Javadoc comment. 104
Parameter source should be final. 104
Parameter type should be final. 104
Parameter ignoreProperties should be final. 104
'cast' is not followed by whitespace. 106

org/galaxy/services/beans/internal/GraphEdgeBean.java

Violation Message Line
File does not end with a newline. 0
Line has trailing spaces. 8
Missing a Javadoc comment. 14
Missing a Javadoc comment. 18
Parameter instance should be final. 18
Method 'getFrom' is not designed for extension - needs to be abstract, final or empty. 22
Missing a Javadoc comment. 22
Method 'setFrom' is not designed for extension - needs to be abstract, final or empty. 26
Missing a Javadoc comment. 26
Parameter from should be final. 26
Method 'getTo' is not designed for extension - needs to be abstract, final or empty. 30
Missing a Javadoc comment. 30
Method 'setTo' is not designed for extension - needs to be abstract, final or empty. 34
Missing a Javadoc comment. 34
Parameter to should be final. 34
Method 'getReference' is not designed for extension - needs to be abstract, final or empty. 38
Missing a Javadoc comment. 38
Method 'setReference' is not designed for extension - needs to be abstract, final or empty. 42
Missing a Javadoc comment. 42
Parameter reference should be final. 42
Line has trailing spaces. 45

org/galaxy/services/beans/internal/GroupBean.java

Violation Message Line
File does not end with a newline. 0
'{' is not preceded with whitespace. 10
Line has trailing spaces. 14
Line has trailing spaces. 23
Parameter instance should be final. 27
Line has trailing spaces. 30

org/galaxy/services/beans/internal/HitBean.java

Violation Message Line
Missing a Javadoc comment. 14
Missing a Javadoc comment. 18
Parameter instance should be final. 18
Method 'getContentType' is not designed for extension - needs to be abstract, final or empty. 22
Missing a Javadoc comment. 22
Method 'setContentType' is not designed for extension - needs to be abstract, final or empty. 26
Missing a Javadoc comment. 26
Parameter contentType should be final. 26
Method 'getUid' is not designed for extension - needs to be abstract, final or empty. 30
Missing a Javadoc comment. 30
Method 'setUid' is not designed for extension - needs to be abstract, final or empty. 34
Missing a Javadoc comment. 34
Parameter uid should be final. 34
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 38
Missing a Javadoc comment. 38
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 42
Missing a Javadoc comment. 42
Parameter id should be final. 42
Method 'getRevision' is not designed for extension - needs to be abstract, final or empty. 46
Missing a Javadoc comment. 46
Method 'setRevision' is not designed for extension - needs to be abstract, final or empty. 50
Missing a Javadoc comment. 50
Parameter revision should be final. 50
Method 'getTitle' is not designed for extension - needs to be abstract, final or empty. 54
Missing a Javadoc comment. 54
Method 'setTitle' is not designed for extension - needs to be abstract, final or empty. 58
Missing a Javadoc comment. 58
Parameter title should be final. 58
Method 'getSnippet' is not designed for extension - needs to be abstract, final or empty. 62
Missing a Javadoc comment. 62
Method 'setSnippet' is not designed for extension - needs to be abstract, final or empty. 66
Missing a Javadoc comment. 66
Parameter snippet should be final. 66
Method 'getReference' is not designed for extension - needs to be abstract, final or empty. 70
Missing a Javadoc comment. 70
Method 'setReference' is not designed for extension - needs to be abstract, final or empty. 74
Missing a Javadoc comment. 74
Parameter reference should be final. 74
Method 'getTimestamp' is not designed for extension - needs to be abstract, final or empty. 78
Missing a Javadoc comment. 78
Method 'setTimestamp' is not designed for extension - needs to be abstract, final or empty. 82
Missing a Javadoc comment. 82
Parameter timestamp should be final. 82
Method 'getSimilarity' is not designed for extension - needs to be abstract, final or empty. 86
Missing a Javadoc comment. 86
Method 'setSimilarity' is not designed for extension - needs to be abstract, final or empty. 90
Missing a Javadoc comment. 90
Parameter similarity should be final. 90
Method 'getAttributes' is not designed for extension - needs to be abstract, final or empty. 94
Missing a Javadoc comment. 94
Method 'setAttributes' is not designed for extension - needs to be abstract, final or empty. 98
Missing a Javadoc comment. 98
Parameter attributes should be final. 98
Method 'isStartGroup' is not designed for extension - needs to be abstract, final or empty. 102
Missing a Javadoc comment. 102
Method 'setStartGroup' is not designed for extension - needs to be abstract, final or empty. 106
Missing a Javadoc comment. 106
Parameter startGroup should be final. 106

org/galaxy/services/beans/internal/IndexSettingsBean.java

Violation Message Line
Line has trailing spaces. 7
Missing a Javadoc comment. 13
Line has trailing spaces. 16
Missing a Javadoc comment. 17
Parameter settings should be final. 17
Method 'getSettings' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'getCollection' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Method 'setCollection' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Parameter collection should be final. 29
Method 'getOwner' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Method 'setOwner' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Parameter owner should be final. 37
Method 'isMultiThreadExecution' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Method 'setMultiThreadExecution' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Parameter multiThreadExecution should be final. 45
Method 'getCapacity' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Method 'setCapacity' is not designed for extension - needs to be abstract, final or empty. 53
Missing a Javadoc comment. 53
Parameter capacity should be final. 53
Method 'getMergeFactor' is not designed for extension - needs to be abstract, final or empty. 57
Missing a Javadoc comment. 57
Method 'setMergeFactor' is not designed for extension - needs to be abstract, final or empty. 61
Missing a Javadoc comment. 61
Parameter mergeFactor should be final. 61
Method 'getIndexConstPeriodOfTime' is not designed for extension - needs to be abstract, final or empty. 65
Missing a Javadoc comment. 65
Method 'setIndexConstPeriodOfTime' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Parameter indexConstPeriodOfTime should be final. 69
Method 'getCacheSize' is not designed for extension - needs to be abstract, final or empty. 73
Missing a Javadoc comment. 73
Method 'setCacheSize' is not designed for extension - needs to be abstract, final or empty. 77
Missing a Javadoc comment. 77
Parameter cacheSize should be final. 77
Method 'getEvaluationModel' is not designed for extension - needs to be abstract, final or empty. 81
Missing a Javadoc comment. 81
Method 'setEvaluationModel' is not designed for extension - needs to be abstract, final or empty. 85
Missing a Javadoc comment. 85
Parameter evaluationModel should be final. 85
Method 'getMaxHitsToScan' is not designed for extension - needs to be abstract, final or empty. 89
Missing a Javadoc comment. 89
Method 'setMaxHitsToScan' is not designed for extension - needs to be abstract, final or empty. 93
Missing a Javadoc comment. 93
Parameter maxHitsToScan should be final. 93
Method 'getPageRankBooster' is not designed for extension - needs to be abstract, final or empty. 97
Missing a Javadoc comment. 97
Method 'setPageRankBooster' is not designed for extension - needs to be abstract, final or empty. 101
Missing a Javadoc comment. 101
Parameter pageRankBooster should be final. 101
Method 'getFilters' is not designed for extension - needs to be abstract, final or empty. 105
Missing a Javadoc comment. 105
Method 'setFilters' is not designed for extension - needs to be abstract, final or empty. 109
Missing a Javadoc comment. 109
Parameter filters should be final. 109
Method 'getRequireRoles' is not designed for extension - needs to be abstract, final or empty. 113
Missing a Javadoc comment. 113
Method 'setRequireRoles' is not designed for extension - needs to be abstract, final or empty. 117
Missing a Javadoc comment. 117
Parameter requireRoles should be final. 117
Line has trailing spaces. 120

org/galaxy/services/beans/internal/InternalBean.java

Violation Message Line
Type Javadoc comment is missing an @param <T> tag. 8
Line has trailing spaces. 9
Missing a Javadoc comment. 11
Variable 'instance' must be private and have accessor methods. 11
Missing a Javadoc comment. 13
Line has trailing spaces. 16
Missing a Javadoc comment. 17
Parameter instance should be final. 17
'instance' hides a field. 17
Line has trailing spaces. 20
Method 'getInternal' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Line has trailing spaces. 24

org/galaxy/services/beans/internal/InternalBeanFactory.java

Violation Message Line
Missing a Javadoc comment. 38
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 38
Missing a Javadoc comment. 40
Line is longer than 80 characters (found 82). 45
Line is longer than 80 characters (found 82). 52
Line is longer than 80 characters (found 81). 54
Line is longer than 80 characters (found 99). 56
Line is longer than 80 characters (found 101). 57
Line is longer than 80 characters (found 111). 58
Line is longer than 80 characters (found 105). 59
Line is longer than 80 characters (found 104). 60
Line is longer than 80 characters (found 107). 62
Line is longer than 80 characters (found 122). 63
Missing a Javadoc comment. 66
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 70
Missing a Javadoc comment. 70
Parameter instance should be final. 70
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 74
Missing a Javadoc comment. 74
Parameter instance should be final. 74
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 78
Missing a Javadoc comment. 78
Parameter instance should be final. 78
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 82
Missing a Javadoc comment. 82
Parameter instance should be final. 82
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 86
Missing a Javadoc comment. 86
Parameter instance should be final. 86
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 90
Missing a Javadoc comment. 90
Parameter instance should be final. 90
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 94
Missing a Javadoc comment. 94
Parameter instance should be final. 94
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 98
Missing a Javadoc comment. 98
Parameter instance should be final. 98
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 102
Missing a Javadoc comment. 102
Parameter instance should be final. 102
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 106
Missing a Javadoc comment. 106
Parameter instance should be final. 106
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 110
Missing a Javadoc comment. 110
Parameter instance should be final. 110
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 114
Missing a Javadoc comment. 114
Parameter instance should be final. 114
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 118
Missing a Javadoc comment. 118
Parameter instance should be final. 118
Line is longer than 80 characters (found 92). 122
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 122
Missing a Javadoc comment. 122
',' is not followed by whitespace. 122
Parameter instance should be final. 122
Parameter from should be final. 122
Parameter to should be final. 122
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 141
Missing a Javadoc comment. 141
Parameter instance should be final. 141
Parameter from should be final. 141

org/galaxy/services/beans/internal/ListableFacadeBean.java

Violation Message Line
Line is longer than 80 characters (found 111). 19
Type Javadoc comment is missing an @param <A> tag. 19
Type Javadoc comment is missing an @param <I> tag. 19
First sentence should end with a period. 21
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 26
Variable 'internal' must be private and have accessor methods. 39
Variable 'api' must be private and have accessor methods. 45
Parameter internal should be final. 61
'internal' hides a field. 61
Expected @param tag for 'internal'. 61
Missing a Javadoc comment. 65
Parameter api should be final. 65
'api' hides a field. 65
Method 'getInternalBean' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Method 'getApiBean' is not designed for extension - needs to be abstract, final or empty. 86
Missing a Javadoc comment. 86
Missing a Javadoc comment. 102
Missing a Javadoc comment. 104
Missing a Javadoc comment. 106
Missing a Javadoc comment. 112
Line is longer than 80 characters (found 86). 118
Method 'convertBean' is not designed for extension - needs to be abstract, final or empty. 118
Missing a Javadoc comment. 118
Parameter source should be final. 118
Parameter type should be final. 118
Parameter ignoreProperties should be final. 118

org/galaxy/services/beans/internal/PhraseBean.java

Violation Message Line
Line has trailing spaces. 7
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getText' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'setText' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter text should be final. 25
Method 'getUsed' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Method 'setUsed' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Parameter used should be final. 33
Line has trailing spaces. 36

org/galaxy/services/beans/internal/PreferenceBean.java

Violation Message Line
Line has trailing spaces. 6
Line has trailing spaces. 7
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getContext' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'setContext' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter context should be final. 25
Method 'getKey' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Method 'setKey' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Parameter key should be final. 33
Method 'getValue' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Method 'setValue' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Parameter value should be final. 41
Line has trailing spaces. 44

org/galaxy/services/beans/internal/QueryBean.java

Violation Message Line
Missing a Javadoc comment. 12
Line has trailing spaces. 15
Missing a Javadoc comment. 16
Parameter instance should be final. 16
Method 'getCollection' is not designed for extension - needs to be abstract, final or empty. 20
Missing a Javadoc comment. 20
Method 'setCollection' is not designed for extension - needs to be abstract, final or empty. 24
Missing a Javadoc comment. 24
Parameter collection should be final. 24
Method 'getText' is not designed for extension - needs to be abstract, final or empty. 28
Missing a Javadoc comment. 28
Method 'setText' is not designed for extension - needs to be abstract, final or empty. 32
Missing a Javadoc comment. 32
Parameter text should be final. 32
Method 'getOffset' is not designed for extension - needs to be abstract, final or empty. 36
Missing a Javadoc comment. 36
Method 'setOffset' is not designed for extension - needs to be abstract, final or empty. 40
Missing a Javadoc comment. 40
Parameter offset should be final. 40
Method 'getLimit' is not designed for extension - needs to be abstract, final or empty. 44
Missing a Javadoc comment. 44
Method 'setLimit' is not designed for extension - needs to be abstract, final or empty. 48
Missing a Javadoc comment. 48
Parameter limit should be final. 48
Method 'getControls' is not designed for extension - needs to be abstract, final or empty. 52
Missing a Javadoc comment. 52
Method 'setControls' is not designed for extension - needs to be abstract, final or empty. 56
Missing a Javadoc comment. 56
Parameter controls should be final. 56
Line has trailing spaces. 59

org/galaxy/services/beans/internal/ResourceBean.java

Violation Message Line
Line is longer than 80 characters (found 82). 12
Missing a Javadoc comment. 15
Line has trailing spaces. 16
Missing a Javadoc comment. 17
Line has trailing spaces. 20
Missing a Javadoc comment. 21
Parameter resource should be final. 21
Line has trailing spaces. 24
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Parameter id should be final. 29
Method 'getUuid' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Method 'setUuid' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Parameter uuid should be final. 37
Method 'getRevision' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Method 'setRevision' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Parameter revision should be final. 45
Method 'getCollection' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Method 'setCollection' is not designed for extension - needs to be abstract, final or empty. 53
Missing a Javadoc comment. 53
Parameter collection should be final. 53
Method 'getReference' is not designed for extension - needs to be abstract, final or empty. 57
Missing a Javadoc comment. 57
Method 'setReference' is not designed for extension - needs to be abstract, final or empty. 61
Missing a Javadoc comment. 61
Parameter reference should be final. 61
Method 'getTitle' is not designed for extension - needs to be abstract, final or empty. 65
Missing a Javadoc comment. 65
Method 'setTitle' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Parameter title should be final. 69
Method 'getMime' is not designed for extension - needs to be abstract, final or empty. 73
Missing a Javadoc comment. 73
Method 'setMime' is not designed for extension - needs to be abstract, final or empty. 77
Missing a Javadoc comment. 77
Parameter mime should be final. 77
Method 'getChecksum' is not designed for extension - needs to be abstract, final or empty. 81
Missing a Javadoc comment. 81
Method 'setChecksum' is not designed for extension - needs to be abstract, final or empty. 85
Missing a Javadoc comment. 85
Parameter checksum should be final. 85
Method 'getTimestamp' is not designed for extension - needs to be abstract, final or empty. 89
Missing a Javadoc comment. 89
Method 'setTimestamp' is not designed for extension - needs to be abstract, final or empty. 93
Missing a Javadoc comment. 93
Parameter timestamp should be final. 93
Method 'getData' is not designed for extension - needs to be abstract, final or empty. 97
Missing a Javadoc comment. 97
Method 'setData' is not designed for extension - needs to be abstract, final or empty. 101
Missing a Javadoc comment. 101
Parameter data should be final. 101
Method 'getText' is not designed for extension - needs to be abstract, final or empty. 105
Missing a Javadoc comment. 105
Method 'setText' is not designed for extension - needs to be abstract, final or empty. 109
Missing a Javadoc comment. 109
Parameter text should be final. 109
Method 'getMeta' is not designed for extension - needs to be abstract, final or empty. 113
Missing a Javadoc comment. 113
Method 'setMeta' is not designed for extension - needs to be abstract, final or empty. 117
Missing a Javadoc comment. 117
Parameter meta should be final. 117
Method 'getDataSource' is not designed for extension - needs to be abstract, final or empty. 121
Missing a Javadoc comment. 121
Method 'setDataSource' is not designed for extension - needs to be abstract, final or empty. 125
Missing a Javadoc comment. 125
Parameter dataSource should be final. 125
Line has trailing spaces. 128

org/galaxy/services/beans/internal/SearchResultBean.java

Violation Message Line
Line has trailing spaces. 10
Missing a Javadoc comment. 16
Missing a Javadoc comment. 20
Parameter instance should be final. 20
Method 'getOffset' is not designed for extension - needs to be abstract, final or empty. 24
Missing a Javadoc comment. 24
Method 'setOffset' is not designed for extension - needs to be abstract, final or empty. 28
Missing a Javadoc comment. 28
Parameter offset should be final. 28
Method 'getWouldBe' is not designed for extension - needs to be abstract, final or empty. 32
Missing a Javadoc comment. 32
Method 'setWouldBe' is not designed for extension - needs to be abstract, final or empty. 36
Missing a Javadoc comment. 36
Parameter wouldBe should be final. 36
Method 'getScanned' is not designed for extension - needs to be abstract, final or empty. 40
Missing a Javadoc comment. 40
Method 'setScanned' is not designed for extension - needs to be abstract, final or empty. 44
Missing a Javadoc comment. 44
Parameter scanned should be final. 44
Method 'getTotalCount' is not designed for extension - needs to be abstract, final or empty. 48
Missing a Javadoc comment. 48
Method 'setTotalCount' is not designed for extension - needs to be abstract, final or empty. 52
Missing a Javadoc comment. 52
Parameter totalCount should be final. 52
Line has trailing spaces. 55
Method 'getExecutionTime' is not designed for extension - needs to be abstract, final or empty. 56
Missing a Javadoc comment. 56
Method 'setExecutionTime' is not designed for extension - needs to be abstract, final or empty. 60
Missing a Javadoc comment. 60
Parameter executionTime should be final. 60
Method 'getResultLength' is not designed for extension - needs to be abstract, final or empty. 64
Missing a Javadoc comment. 64
Method 'setResultLength' is not designed for extension - needs to be abstract, final or empty. 68
Missing a Javadoc comment. 68
Parameter resultLength should be final. 68
Method 'getHits' is not designed for extension - needs to be abstract, final or empty. 72
Missing a Javadoc comment. 72
Line has trailing spaces. 74
Method 'setHits' is not designed for extension - needs to be abstract, final or empty. 81
Missing a Javadoc comment. 81
Parameter hits should be final. 81
Line has trailing spaces. 83
Method 'getUnsatisfiedMimeType' is not designed for extension - needs to be abstract, final or empty. 89
Missing a Javadoc comment. 89
Method 'setUnsatisfiedMimeType' is not designed for extension - needs to be abstract, final or empty. 93
Missing a Javadoc comment. 93
Parameter unsatisfiedMimeType should be final. 93
Line has trailing spaces. 96

org/galaxy/services/beans/internal/SharingBean.java

Violation Message Line
File does not end with a newline. 0
Line has trailing spaces. 7
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getEntityId' is not designed for extension - needs to be abstract, final or empty. 21
Missing a Javadoc comment. 21
Method 'setEntityId' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter entityId should be final. 25
Method 'getCollectionId' is not designed for extension - needs to be abstract, final or empty. 29
Missing a Javadoc comment. 29
Method 'setCollectionId' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Parameter collectionId should be final. 33
Method 'isGroup' is not designed for extension - needs to be abstract, final or empty. 37
Missing a Javadoc comment. 37
Method 'setGroup' is not designed for extension - needs to be abstract, final or empty. 41
Missing a Javadoc comment. 41
Parameter group should be final. 41
Method 'isWritable' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Method 'setWritable' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Parameter writable should be final. 49
Line has trailing spaces. 52

org/galaxy/services/beans/internal/TaskInfoBean.java

Violation Message Line
File does not end with a newline. 0
Line has trailing spaces. 12
Missing a Javadoc comment. 13
Missing a Javadoc comment. 17
Parameter instance should be final. 17
Method 'getOwnerId' is not designed for extension - needs to be abstract, final or empty. 24
Missing a Javadoc comment. 24
Method 'setOwnerId' is not designed for extension - needs to be abstract, final or empty. 28
Missing a Javadoc comment. 28
Parameter ownerId should be final. 28
Method 'getSystemId' is not designed for extension - needs to be abstract, final or empty. 32
Missing a Javadoc comment. 32
Method 'setSystemId' is not designed for extension - needs to be abstract, final or empty. 36
Missing a Javadoc comment. 36
Parameter systemId should be final. 36
Method 'getParentId' is not designed for extension - needs to be abstract, final or empty. 40
Missing a Javadoc comment. 40
Method 'setParentId' is not designed for extension - needs to be abstract, final or empty. 44
Missing a Javadoc comment. 44
Parameter parentId should be final. 44
Method 'getSerialId' is not designed for extension - needs to be abstract, final or empty. 48
Missing a Javadoc comment. 48
Method 'setSerialId' is not designed for extension - needs to be abstract, final or empty. 52
Missing a Javadoc comment. 52
Parameter serialId should be final. 52
Method 'getTargetId' is not designed for extension - needs to be abstract, final or empty. 56
Missing a Javadoc comment. 56
Method 'setTargetId' is not designed for extension - needs to be abstract, final or empty. 60
Missing a Javadoc comment. 60
Parameter targetId should be final. 60
Method 'getStartAt' is not designed for extension - needs to be abstract, final or empty. 64
Missing a Javadoc comment. 64
Method 'setStartAt' is not designed for extension - needs to be abstract, final or empty. 68
Missing a Javadoc comment. 68
Parameter startAt should be final. 68
Method 'getCancelAt' is not designed for extension - needs to be abstract, final or empty. 72
Missing a Javadoc comment. 72
Method 'setCancelAt' is not designed for extension - needs to be abstract, final or empty. 76
Missing a Javadoc comment. 76
Parameter cancelAt should be final. 76
Method 'getProcessSerial' is not designed for extension - needs to be abstract, final or empty. 80
Missing a Javadoc comment. 80
Method 'setProcessSerial' is not designed for extension - needs to be abstract, final or empty. 84
Missing a Javadoc comment. 84
Parameter processSerial should be final. 84
Method 'getData' is not designed for extension - needs to be abstract, final or empty. 88
Missing a Javadoc comment. 88
Method 'setData' is not designed for extension - needs to be abstract, final or empty. 92
Missing a Javadoc comment. 92
Parameter data should be final. 92
Method 'getAccepted' is not designed for extension - needs to be abstract, final or empty. 96
Missing a Javadoc comment. 96
Method 'setAccepted' is not designed for extension - needs to be abstract, final or empty. 100
Missing a Javadoc comment. 100
Parameter accepted should be final. 100
Method 'getNewcomers' is not designed for extension - needs to be abstract, final or empty. 104
Missing a Javadoc comment. 104
Method 'setNewcomers' is not designed for extension - needs to be abstract, final or empty. 108
Missing a Javadoc comment. 108
Parameter newcomers should be final. 108
Method 'getUnique' is not designed for extension - needs to be abstract, final or empty. 112
Missing a Javadoc comment. 112
Method 'setUnique' is not designed for extension - needs to be abstract, final or empty. 116
Missing a Javadoc comment. 116
Parameter unique should be final. 116
Method 'getProcessed' is not designed for extension - needs to be abstract, final or empty. 120
Missing a Javadoc comment. 120
Method 'setProcessed' is not designed for extension - needs to be abstract, final or empty. 124
Missing a Javadoc comment. 124
Parameter processed should be final. 124
Method 'getFailed' is not designed for extension - needs to be abstract, final or empty. 128
Missing a Javadoc comment. 128
Method 'setFailed' is not designed for extension - needs to be abstract, final or empty. 132
Missing a Javadoc comment. 132
Parameter failed should be final. 132
Method 'getDataSourceId' is not designed for extension - needs to be abstract, final or empty. 136
Missing a Javadoc comment. 136
Method 'setDataSourceId' is not designed for extension - needs to be abstract, final or empty. 140
Missing a Javadoc comment. 140
Parameter dataSourceId should be final. 140
Line has trailing spaces. 143
Method 'getCollectionId' is not designed for extension - needs to be abstract, final or empty. 144
Missing a Javadoc comment. 144
Method 'setCollectionId' is not designed for extension - needs to be abstract, final or empty. 148
Missing a Javadoc comment. 148
Parameter collectionId should be final. 148
Line has trailing spaces. 151
Method 'getWrittenAt' is not designed for extension - needs to be abstract, final or empty. 152
Missing a Javadoc comment. 152
Method 'setWrittenAt' is not designed for extension - needs to be abstract, final or empty. 156
Missing a Javadoc comment. 156
Parameter writtenAt should be final. 156
Method 'getMessage' is not designed for extension - needs to be abstract, final or empty. 160
Missing a Javadoc comment. 160
Method 'setMessage' is not designed for extension - needs to be abstract, final or empty. 164
Missing a Javadoc comment. 164
Parameter message should be final. 164
Line has trailing spaces. 167
Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. 168
Missing a Javadoc comment. 168
Method 'setStatus' is not designed for extension - needs to be abstract, final or empty. 172
Missing a Javadoc comment. 172
Parameter status should be final. 172
Line has trailing spaces. 175

org/galaxy/services/beans/internal/TimelineBean.java

Violation Message Line
Line has trailing spaces. 9
Line has trailing spaces. 10
Missing a Javadoc comment. 16
Missing a Javadoc comment. 20
Parameter instance should be final. 20
Method 'getUuid' is not designed for extension - needs to be abstract, final or empty. 24
Missing a Javadoc comment. 24
Method 'setUuid' is not designed for extension - needs to be abstract, final or empty. 28
Missing a Javadoc comment. 28
Parameter uuid should be final. 28
Method 'getReference' is not designed for extension - needs to be abstract, final or empty. 32
Missing a Javadoc comment. 32
Method 'setReference' is not designed for extension - needs to be abstract, final or empty. 36
Missing a Javadoc comment. 36
Parameter reference should be final. 36
Method 'getEntries' is not designed for extension - needs to be abstract, final or empty. 40
Missing a Javadoc comment. 40
Line has trailing spaces. 42
Method 'setEntries' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Parameter entries should be final. 49
Line has trailing spaces. 51
Line has trailing spaces. 56

org/galaxy/services/beans/internal/TimelineEntryBean.java

Violation Message Line
Unused import - org.galaxy.wayback.Timeline. 3
Line has trailing spaces. 7
Line has trailing spaces. 8
Missing a Javadoc comment. 14
Missing a Javadoc comment. 18
Parameter instance should be final. 18
Method 'getTitle' is not designed for extension - needs to be abstract, final or empty. 22
Missing a Javadoc comment. 22
Method 'setTitle' is not designed for extension - needs to be abstract, final or empty. 26
Missing a Javadoc comment. 26
Parameter title should be final. 26
Method 'getId' is not designed for extension - needs to be abstract, final or empty. 30
Missing a Javadoc comment. 30
Method 'setId' is not designed for extension - needs to be abstract, final or empty. 34
Missing a Javadoc comment. 34
Parameter id should be final. 34
Method 'getRevision' is not designed for extension - needs to be abstract, final or empty. 38
Missing a Javadoc comment. 38
Method 'setRevision' is not designed for extension - needs to be abstract, final or empty. 42
Missing a Javadoc comment. 42
Parameter revision should be final. 42
Method 'getTimestamp' is not designed for extension - needs to be abstract, final or empty. 46
Missing a Javadoc comment. 46
Method 'setTimestamp' is not designed for extension - needs to be abstract, final or empty. 50
Missing a Javadoc comment. 50
Parameter timestamp should be final. 50
Line has trailing spaces. 53

org/galaxy/services/beans/internal/UserBean.java

Violation Message Line
File does not end with a newline. 0
'{' is not preceded with whitespace. 10
Line has trailing spaces. 11
Line has trailing spaces. 14
Line has trailing spaces. 23
Parameter instance should be final. 27
Method 'getEmail' is not designed for extension - needs to be abstract, final or empty. 31
Missing a Javadoc comment. 31
Method 'setEmail' is not designed for extension - needs to be abstract, final or empty. 35
Missing a Javadoc comment. 35
Parameter email should be final. 35
Method 'getPassword' is not designed for extension - needs to be abstract, final or empty. 39
Missing a Javadoc comment. 39
Method 'setPassword' is not designed for extension - needs to be abstract, final or empty. 43
Missing a Javadoc comment. 43
Parameter password should be final. 43
Method 'isLocked' is not designed for extension - needs to be abstract, final or empty. 47
Missing a Javadoc comment. 47
Method 'setLocked' is not designed for extension - needs to be abstract, final or empty. 51
Missing a Javadoc comment. 51
Parameter locked should be final. 51
Method 'isAdmin' is not designed for extension - needs to be abstract, final or empty. 55
Missing a Javadoc comment. 55
Method 'setAdmin' is not designed for extension - needs to be abstract, final or empty. 59
Missing a Javadoc comment. 59
Parameter admin should be final. 59
Line has trailing spaces. 61
Line has trailing spaces. 63
Method 'isDeleted' is not designed for extension - needs to be abstract, final or empty. 64
Missing a Javadoc comment. 64
Method 'setDeleted' is not designed for extension - needs to be abstract, final or empty. 68
Missing a Javadoc comment. 68
Parameter deleted should be final. 68

org/galaxy/services/beans/internal/package-info.java

Violation Message Line
Line has trailing spaces. 2
Line has trailing spaces. 4

org/galaxy/services/package-info.java

Violation Message Line
Line has trailing spaces. 3

org/galaxy/services/params/IDSet.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 17
Parameter value should be final. 26
Expected @param tag for 'value'. 26
Redundant throws: 'WebApplicationException' is unchecked exception. 26
Must have at least one statement. 36
Line is longer than 80 characters (found 85). 45
Line is longer than 80 characters (found 98). 46
Method 'value' is not designed for extension - needs to be abstract, final or empty. 58

org/galaxy/services/params/Listing.java

Violation Message Line
Line has trailing spaces. 5
Variable 'limit' must be private and have accessor methods. 27
Variable 'offset' must be private and have accessor methods. 32
Missing a Javadoc comment. 33
Variable 'sort' must be private and have accessor methods. 33
Missing a Javadoc comment. 34
Variable 'asc' must be private and have accessor methods. 34
Missing a Javadoc comment. 35
Variable 'search' must be private and have accessor methods. 35
Method 'getLimit' is not designed for extension - needs to be abstract, final or empty. 46
Missing a Javadoc comment. 46
Method 'setLimit' is not designed for extension - needs to be abstract, final or empty. 50
Missing a Javadoc comment. 50
Parameter limit should be final. 50
'limit' hides a field. 50
Method 'getOffset' is not designed for extension - needs to be abstract, final or empty. 54
Missing a Javadoc comment. 54
Method 'setOffset' is not designed for extension - needs to be abstract, final or empty. 58
Missing a Javadoc comment. 58
Parameter offset should be final. 58
'offset' hides a field. 58
Method 'getSort' is not designed for extension - needs to be abstract, final or empty. 62
Missing a Javadoc comment. 62
Method 'setSort' is not designed for extension - needs to be abstract, final or empty. 66
Missing a Javadoc comment. 66
Parameter sort should be final. 66
'sort' hides a field. 66
Method 'isAsc' is not designed for extension - needs to be abstract, final or empty. 70
Missing a Javadoc comment. 70
Method 'setAsc' is not designed for extension - needs to be abstract, final or empty. 74
Missing a Javadoc comment. 74
Parameter asc should be final. 74
'asc' hides a field. 74
Method 'getSearch' is not designed for extension - needs to be abstract, final or empty. 78
Missing a Javadoc comment. 78
Method 'setSearch' is not designed for extension - needs to be abstract, final or empty. 82
Missing a Javadoc comment. 82
Parameter search should be final. 82
'search' hides a field. 82

org/galaxy/services/params/UUIDParam.java

Violation Message Line
Unused import - java.util.UUID. 3
Missing a Javadoc comment. 16
Parameter name should be final. 25
Expected @param tag for 'name'. 25
Redundant throws: 'WebApplicationException' is unchecked exception. 26
Line is longer than 80 characters (found 89). 33
Method 'value' is not designed for extension - needs to be abstract, final or empty. 42

org/galaxy/services/params/package-info.java

Violation Message Line
Line has trailing spaces. 3

org/galaxy/services/providers/AbstractParameterProvider.java

Violation Message Line
Line is longer than 80 characters (found 103). 24
Missing a Javadoc comment. 27
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 27
Line has trailing spaces. 28
Missing a Javadoc comment. 29
Parameter hc should be final. 38
'hc' hides a field. 38
Method 'getScope' is not designed for extension - needs to be abstract, final or empty. 48
Line is longer than 80 characters (found 138). 63
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 63
Expected @param tag for '<T>'. 63
Parameter ic should be final. 63
Expected @param tag for 'parameterType'. 63
Line has trailing spaces. 68
Line is longer than 80 characters (found 97). 74
Line is longer than 80 characters (found 85). 76
Line is longer than 80 characters (found 88). 82
Line is longer than 80 characters (found 86). 83

org/galaxy/services/providers/BeanFactoryProvider.java

Violation Message Line
Line has trailing spaces. 10
Line is longer than 80 characters (found 97). 16
Line has trailing spaces. 26

org/galaxy/services/providers/ListingParamProvider.java

Violation Message Line
Parameter hc should be final. 28
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 40
Line is longer than 80 characters (found 107). 41
Parameter ic should be final. 41
Expected @param tag for 'ic'. 41
Expected @param tag for 'a'. 41
Expected @param tag for 'c'. 41
Line has trailing spaces. 44

org/galaxy/services/providers/RemoteProxyProvider.java

Violation Message Line
Unused import - java.rmi.Remote. 4
Line is longer than 80 characters (found 97). 19
Line has trailing spaces. 29

org/galaxy/services/providers/SearchQueryProvider.java

Violation Message Line
Unused import - org.galaxy.search.Query. 10
Unused import - org.galaxy.services.params.Listing. 12
Parameter hc should be final. 30
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 42
Line is longer than 80 characters (found 111). 43
Parameter ic should be final. 43
Expected @param tag for 'ic'. 43
Expected @param tag for 'a'. 43
Expected @param tag for 'c'. 43

org/galaxy/services/providers/StartupListener.java

Violation Message Line
Missing a Javadoc comment. 19
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 19
Line has trailing spaces. 20
Method 'onLoaded' is not designed for extension - needs to be abstract, final or empty. 28
Parameter modelContext should be final. 29
Line has trailing spaces. 33

org/galaxy/services/providers/distant/AccountsManagerProvider.java

Violation Message Line
Unused import - java.rmi.Remote. 6
Line is longer than 80 characters (found 106). 18
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 35
Line is longer than 80 characters (found 87). 36
Parameter ic should be final. 36
Parameter a should be final. 36
Line is longer than 80 characters (found 97). 40

org/galaxy/services/providers/distant/AutoCompleterProvider.java

Violation Message Line
Unused import - java.rmi.Remote. 6
Line is longer than 80 characters (found 102). 18
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 35
Line is longer than 80 characters (found 85). 36
Parameter ic should be final. 36
Parameter a should be final. 36
Line is longer than 80 characters (found 93). 40

org/galaxy/services/providers/distant/BoboConnectorProvider.java

Violation Message Line
Unused import - org.galaxy.distant.CollectionsManager. 8
Line is longer than 80 characters (found 102). 19
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 37
Line is longer than 80 characters (found 85). 38
Parameter ic should be final. 38
Parameter a should be final. 38
Line is longer than 80 characters (found 93). 42

org/galaxy/services/providers/distant/CollectionsManagerProvider.java

Violation Message Line
Line is longer than 80 characters (found 112). 17
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 34
Line is longer than 80 characters (found 90). 35
Parameter ic should be final. 35
Parameter a should be final. 35
Line is longer than 80 characters (found 103). 39

org/galaxy/services/providers/distant/ConnectorFacadeProvider.java

Violation Message Line
Line is longer than 80 characters (found 106). 20
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 38
Line is longer than 80 characters (found 87). 39
Parameter ic should be final. 39
Parameter a should be final. 39
Line is longer than 80 characters (found 97). 43

org/galaxy/services/providers/distant/FilePathResolverProvider.java

Violation Message Line
Unused import - java.rmi.Remote. 6
Line is longer than 80 characters (found 108). 18
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 35
Line is longer than 80 characters (found 88). 36
Parameter ic should be final. 36
Parameter a should be final. 36
Line is longer than 80 characters (found 99). 40

org/galaxy/services/providers/distant/FileSystemConnectorProvider.java

Violation Message Line
Unused import - org.galaxy.distant.CollectionsManager. 7
Line is longer than 80 characters (found 114). 18
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 35
Line is longer than 80 characters (found 91). 36
Parameter ic should be final. 36
Parameter a should be final. 36
Line is longer than 80 characters (found 105). 40

org/galaxy/services/providers/distant/PreferencesProvider.java

Violation Message Line
Unused import - java.rmi.Remote. 6
Line is longer than 80 characters (found 98). 18
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 35
Line is longer than 80 characters (found 83). 36
Parameter ic should be final. 36
Parameter a should be final. 36
Line is longer than 80 characters (found 89). 40

org/galaxy/services/providers/distant/SearchProvider.java

Violation Message Line
Line is longer than 80 characters (found 88). 17
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 34
Parameter ic should be final. 35
Parameter a should be final. 35

org/galaxy/services/providers/distant/WaybackProvider.java

Violation Message Line
Unused import - java.rmi.Remote. 6
Line has trailing spaces. 14
Line is longer than 80 characters (found 90). 19
Line has trailing spaces. 32
Method 'getInjectable' is not designed for extension - needs to be abstract, final or empty. 38
Parameter ic should be final. 39
Parameter a should be final. 39
Line is longer than 80 characters (found 81). 43
Line has trailing spaces. 47

org/galaxy/services/providers/distant/package-info.java

Violation Message Line
Line has trailing spaces. 3

org/galaxy/services/providers/exception/AbstractExceptionMapper.java

Violation Message Line
File does not end with a newline. 0
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 21
Line is longer than 80 characters (found 85). 23
Missing a Javadoc comment. 23
Parameter ex should be final. 23
Parameter status should be final. 23
Line is longer than 80 characters (found 98). 27
Missing a Javadoc comment. 27
Parameter ex should be final. 27
Parameter status should be final. 27
Parameter level should be final. 27
Line is longer than 80 characters (found 85). 28
Line has trailing spaces. 30
Line is longer than 80 characters (found 111). 31
Missing a Javadoc comment. 31
Parameter ex should be final. 31
Parameter status should be final. 31
Parameter type should be final. 31
Parameter level should be final. 31
Line has trailing spaces. 53
Line has trailing spaces. 55
Line is longer than 80 characters (found 98). 60
Parameter ex should be final. 60
Expected @param tag for 'ex'. 60
Parameter status should be final. 60
Expected @param tag for 'status'. 60
Parameter type should be final. 60
Expected @param tag for 'type'. 60
Line has trailing spaces. 63

org/galaxy/services/providers/exception/AlreadyExistsExceptionMapper.java

Violation Message Line
Line is longer than 80 characters (found 126). 17
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 25
Parameter exception should be final. 26
Line is longer than 80 characters (found 90). 29

org/galaxy/services/providers/exception/ConnectorExceptionMapper.java

Violation Message Line
Unused import - org.galaxy.connectors.UnknownTaskException. 9
Line is longer than 80 characters (found 118). 18
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 26
Parameter exception should be final. 27
Line has trailing spaces. 30
Line is longer than 80 characters (found 89). 34
Line has trailing spaces. 37
Line is longer than 80 characters (found 89). 40
Line has trailing spaces. 43

org/galaxy/services/providers/exception/DataExceptionMapper.java

Violation Message Line
Unused import - java.rmi.RemoteException. 3
Line is longer than 80 characters (found 108). 17
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 25
Parameter exception should be final. 26
Line is longer than 80 characters (found 81). 29

org/galaxy/services/providers/exception/DefaultExceptionMapper.java

Violation Message Line
Unused import - org.galaxy.db.AlreadyExistsException. 7
Line is longer than 80 characters (found 107). 16
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 24
Parameter exception should be final. 25
Line is longer than 80 characters (found 91). 28

org/galaxy/services/providers/exception/NotFoundExceptionMapper.java

Violation Message Line
Unused import - java.rmi.RemoteException. 3
Line is longer than 80 characters (found 116). 18
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 26
Parameter exception should be final. 27
Line is longer than 80 characters (found 110). 30
Line has trailing spaces. 33

org/galaxy/services/providers/exception/RemoteExceptionMapper.java

Violation Message Line
Line is longer than 80 characters (found 112). 16
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 24
Parameter exception should be final. 25
Line is longer than 80 characters (found 91). 28

org/galaxy/services/providers/exception/SearchQueryExceptionMapper.java

Violation Message Line
Unused import - org.galaxy.connectors.ConnectorException. 7
Unused import - org.galaxy.connectors.ConnectorNotAvailableException. 8
Unused import - org.galaxy.connectors.UnknownTaskException. 9
Line is longer than 80 characters (found 122). 20
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 28
Parameter exception should be final. 29
Line is longer than 80 characters (found 118). 33

org/galaxy/services/providers/exception/ServiceUnavailabilityMapper.java

Violation Message Line
Line is longer than 80 characters (found 130). 17
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 25
Parameter exception should be final. 26
Line is longer than 80 characters (found 89). 29

org/galaxy/services/providers/exception/UnsupportedTaskExceptionMapper.java

Violation Message Line
Line is longer than 80 characters (found 126). 16
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 24
Parameter exception should be final. 25

org/galaxy/services/providers/exception/WebApplicationExceptionMapper.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 128). 15
Method 'toResponse' is not designed for extension - needs to be abstract, final or empty. 17
Parameter exception should be final. 18
Line has trailing spaces. 19
Line is longer than 80 characters (found 121). 22
Line has trailing spaces. 26

org/galaxy/services/providers/exception/package-info.java

Violation Message Line
Line has trailing spaces. 4

org/galaxy/services/providers/package-info.java

Violation Message Line
Line has trailing spaces. 3

org/galaxy/services/resources/AbstractService.java

Violation Message Line
File does not end with a newline. 0
Line has trailing spaces. 18
Name 'logger' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'. 21
Line has trailing spaces. 22
Variable 'factory' must be private and have accessor methods. 29
Method 'toString' is not designed for extension - needs to be abstract, final or empty. 31
Line has trailing spaces. 35

org/galaxy/services/resources/AccountsService.java

Violation Message Line
File does not end with a newline. 0
Method 'listUsers' is not designed for extension - needs to be abstract, final or empty. 61
Missing a Javadoc comment. 61
Line is longer than 80 characters (found 109). 63
Parameter listing should be final. 63
Line is longer than 80 characters (found 97). 65
Line has trailing spaces. 69
Method 'listAllUsers' is not designed for extension - needs to be abstract, final or empty. 70
Missing a Javadoc comment. 70
Line is longer than 80 characters (found 112). 72
Parameter listing should be final. 72
Line is longer than 80 characters (found 96). 74
Method 'createUser' is not designed for extension - needs to be abstract, final or empty. 79
Missing a Javadoc comment. 79
Line is longer than 80 characters (found 102). 81
Parameter id should be final. 81
Parameter user should be final. 81
Method 'getUser' is not designed for extension - needs to be abstract, final or empty. 85
Missing a Javadoc comment. 85
Line is longer than 80 characters (found 88). 87
Parameter id should be final. 87
Method 'getUserByNamer' is not designed for extension - needs to be abstract, final or empty. 91
Missing a Javadoc comment. 91
Line is longer than 80 characters (found 110). 93
Parameter username should be final. 93
Method 'updateUser' is not designed for extension - needs to be abstract, final or empty. 97
Missing a Javadoc comment. 97
Line is longer than 80 characters (found 102). 99
Parameter id should be final. 99
Parameter user should be final. 99
Method 'deleteUser' is not designed for extension - needs to be abstract, final or empty. 103
Missing a Javadoc comment. 103
Line is longer than 80 characters (found 91). 105
Parameter id should be final. 105
Line has trailing spaces. 108
Method 'activateUser' is not designed for extension - needs to be abstract, final or empty. 109
Missing a Javadoc comment. 109
'+' is not preceded with whitespace. 110
'+' is not followed by whitespace. 110
Line is longer than 80 characters (found 93). 111
Parameter id should be final. 111
Method 'listUserHomeFolder' is not designed for extension - needs to be abstract, final or empty. 115
Missing a Javadoc comment. 115
Line is longer than 80 characters (found 172). 117
Parameter id should be final. 117
Parameter path should be final. 117
Line has trailing spaces. 120
Line is longer than 80 characters (found 96). 126
Method 'lockAccount' is not designed for extension - needs to be abstract, final or empty. 132
Missing a Javadoc comment. 132
Line is longer than 80 characters (found 111). 134
Parameter id should be final. 134
Redundant throws: 'NotFoundException' is subclass of 'DataException'. 134
Method 'unlockAccount' is not designed for extension - needs to be abstract, final or empty. 138
Missing a Javadoc comment. 138
Line is longer than 80 characters (found 113). 140
Parameter id should be final. 140
Redundant throws: 'NotFoundException' is subclass of 'DataException'. 140
Line has trailing spaces. 143
Method 'assignMemberToGroup' is not designed for extension - needs to be abstract, final or empty. 144
Missing a Javadoc comment. 144
Line is longer than 80 characters (found 151). 146
Parameter userId should be final. 146
Parameter groups should be final. 146
Method 'listGroups' is not designed for extension - needs to be abstract, final or empty. 155
Missing a Javadoc comment. 155
Line is longer than 80 characters (found 111). 157
Parameter listing should be final. 157
Line is longer than 80 characters (found 90). 159
Method 'createGroup' is not designed for extension - needs to be abstract, final or empty. 164
Missing a Javadoc comment. 164
Line is longer than 80 characters (found 106). 166
Parameter id should be final. 166
Parameter group should be final. 166
Method 'getGroup' is not designed for extension - needs to be abstract, final or empty. 170
Missing a Javadoc comment. 170
Line is longer than 80 characters (found 90). 172
Parameter id should be final. 172
Method 'updateGroup' is not designed for extension - needs to be abstract, final or empty. 176
Missing a Javadoc comment. 176
Line is longer than 80 characters (found 106). 178
Parameter id should be final. 178
Parameter group should be final. 178
Line is longer than 80 characters (found 81). 179
Method 'deleteGroup' is not designed for extension - needs to be abstract, final or empty. 182
Missing a Javadoc comment. 182
Line is longer than 80 characters (found 92). 184
Parameter id should be final. 184
Method 'getUserCapabilities' is not designed for extension - needs to be abstract, final or empty. 192
Missing a Javadoc comment. 192
Line is longer than 80 characters (found 124). 194
Parameter userId should be final. 194
Method 'getUserGroups' is not designed for extension - needs to be abstract, final or empty. 200
Missing a Javadoc comment. 200
Line is longer than 80 characters (found 113). 202
Parameter userId should be final. 202
Line has trailing spaces. 207
Method 'getGroupCapabilities' is not designed for extension - needs to be abstract, final or empty. 212
Missing a Javadoc comment. 212
Line is longer than 80 characters (found 126). 214
Parameter groupId should be final. 214
Method 'addGroupCapabilities' is not designed for extension - needs to be abstract, final or empty. 220
Missing a Javadoc comment. 220
Line is longer than 80 characters (found 164). 222
Parameter groupId should be final. 222
Parameter capabilities should be final. 222
Method 'resetGroupCapabilities' is not designed for extension - needs to be abstract, final or empty. 227
Missing a Javadoc comment. 227
Line is longer than 80 characters (found 166). 229
Parameter groupId should be final. 229
Parameter capabilities should be final. 229
Method 'deleteGroupCapabilities' is not designed for extension - needs to be abstract, final or empty. 234
Missing a Javadoc comment. 234
Line is longer than 80 characters (found 167). 236
Parameter groupId should be final. 236
Parameter capabilities should be final. 236
Method 'getGroupMembers' is not designed for extension - needs to be abstract, final or empty. 245
Missing a Javadoc comment. 245
Line is longer than 80 characters (found 110). 247
Parameter id should be final. 247
Method 'addGroupMembers' is not designed for extension - needs to be abstract, final or empty. 253
Missing a Javadoc comment. 253
Line is longer than 80 characters (found 146). 255
Parameter groupId should be final. 255
Parameter users should be final. 255
Method 'resetGroupMembers' is not designed for extension - needs to be abstract, final or empty. 260
Missing a Javadoc comment. 260
Line is longer than 80 characters (found 148). 262
Parameter groupId should be final. 262
Parameter users should be final. 262
Method 'deleteGroupMembers' is not designed for extension - needs to be abstract, final or empty. 267
Missing a Javadoc comment. 267
Line is longer than 80 characters (found 135). 269
Parameter groupId should be final. 269
Parameter users should be final. 269
Method 'getGroupManagers' is not designed for extension - needs to be abstract, final or empty. 277
Missing a Javadoc comment. 277
Line is longer than 80 characters (found 111). 279
Parameter id should be final. 279
Method 'addGroupManagers' is not designed for extension - needs to be abstract, final or empty. 285
Missing a Javadoc comment. 285
Line is longer than 80 characters (found 147). 287
Parameter groupId should be final. 287
Parameter users should be final. 287
Method 'resetGroupManagers' is not designed for extension - needs to be abstract, final or empty. 292
Missing a Javadoc comment. 292
Line is longer than 80 characters (found 149). 294
Parameter groupId should be final. 294
Parameter users should be final. 294
Method 'deleteGroupManagers' is not designed for extension - needs to be abstract, final or empty. 299
Missing a Javadoc comment. 299
Line is longer than 80 characters (found 136). 301
Parameter groupId should be final. 301
Parameter users should be final. 301
Method 'listCapabilities' is not designed for extension - needs to be abstract, final or empty. 309
Missing a Javadoc comment. 309
Line is longer than 80 characters (found 121). 311
Parameter listing should be final. 311
Line is longer than 80 characters (found 90). 313
Method 'createCapability' is not designed for extension - needs to be abstract, final or empty. 318
Missing a Javadoc comment. 318
Line is longer than 80 characters (found 126). 320
Parameter id should be final. 320
Parameter capability should be final. 320
Line is longer than 80 characters (found 87). 321
Method 'getCapability' is not designed for extension - needs to be abstract, final or empty. 324
Missing a Javadoc comment. 324
Line is longer than 80 characters (found 100). 326
Parameter id should be final. 326
Method 'updateCapability' is not designed for extension - needs to be abstract, final or empty. 330
Missing a Javadoc comment. 330
Line is longer than 80 characters (found 126). 332
Parameter id should be final. 332
Parameter capability should be final. 332
Line is longer than 80 characters (found 91). 333
Method 'deleteCapability' is not designed for extension - needs to be abstract, final or empty. 336
Missing a Javadoc comment. 336
Line is longer than 80 characters (found 97). 338
Parameter id should be final. 338

org/galaxy/services/resources/AutoCompleteService.java

Violation Message Line
Missing a Javadoc comment. 22
Expected an @return tag. 32
Method 'suggest' is not designed for extension - needs to be abstract, final or empty. 32
Parameter text should be final. 33
Expected @throws tag for 'RemoteException'. 34
Unused @param tag for 'phrase'. 41
Parameter suggestion should be final. 45
Expected @param tag for 'suggestion'. 45
Expected @throws tag for 'RemoteException'. 46

org/galaxy/services/resources/BoboConnectorService.java

Violation Message Line
File does not end with a newline. 0
Line has trailing spaces. 36
Line has trailing spaces. 37
Missing a Javadoc comment. 43
Missing a Javadoc comment. 45
Line has trailing spaces. 48
Method 'getAvailableSystems' is not designed for extension - needs to be abstract, final or empty. 49
Missing a Javadoc comment. 49
Line has trailing spaces. 51
Line is longer than 80 characters (found 89). 51
Line has trailing spaces. 55
Line has trailing spaces. 59
Line has trailing spaces. 62
Method 'getAllTasks' is not designed for extension - needs to be abstract, final or empty. 63
Missing a Javadoc comment. 63
Line has trailing spaces. 65
Line is longer than 80 characters (found 117). 65
Parameter listing should be final. 65
Line has trailing spaces. 68
Line is longer than 80 characters (found 99). 68
Line has trailing spaces. 72
Method 'getTasksBySystemId' is not designed for extension - needs to be abstract, final or empty. 73
Missing a Javadoc comment. 73
Line has trailing spaces. 75
Line is longer than 80 characters (found 162). 75
Parameter listing should be final. 75
Parameter systemId should be final. 75
Line has trailing spaces. 78
Line is longer than 80 characters (found 119). 78
Line has trailing spaces. 82
Method 'getCancelAtByDatasourceId' is not designed for extension - needs to be abstract, final or empty. 83
Missing a Javadoc comment. 83
Line has trailing spaces. 85
Line is longer than 80 characters (found 133). 85
Parameter datasources should be final. 85
Line has trailing spaces. 88
Line is longer than 80 characters (found 134). 90
'(' is followed by whitespace. 90
'(' is followed by whitespace. 90
'(' is followed by whitespace. 90
')' is preceded with whitespace. 90
')' is preceded with whitespace. 90
')' is preceded with whitespace. 90
Line has trailing spaces. 92
Line has trailing spaces. 94
Line has trailing spaces. 96
Method 'stopTask' is not designed for extension - needs to be abstract, final or empty. 97
Missing a Javadoc comment. 97
Line is longer than 80 characters (found 133). 99
Parameter userId should be final. 99
Parameter systemId should be final. 99
Parameter serialId should be final. 99

org/galaxy/services/resources/CollectionService.java

Violation Message Line
File does not end with a newline. 0
Missing a Javadoc comment. 37
Line has trailing spaces. 39
Missing a Javadoc comment. 40
Missing a Javadoc comment. 42
Method 'getDiskUsageDetails' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Redundant throws: 'RemoteException' is subclass of 'IOException'. 47
Method 'getDataSourceBasicDetails' is not designed for extension - needs to be abstract, final or empty. 51
Missing a Javadoc comment. 51
Line is longer than 80 characters (found 146). 53
Parameter source should be final. 53
Expected an @return tag. 69
Method 'list' is not designed for extension - needs to be abstract, final or empty. 69
Line is longer than 80 characters (found 110). 70
Parameter listing should be final. 70
Expected @param tag for 'listing'. 70
Expected @throws tag for 'RemoteException'. 70
Expected @throws tag for 'DataException'. 70
Line is longer than 80 characters (found 92). 71
Unused @param tag for 'phrase'. 89
Expected an @return tag. 92
Method 'create' is not designed for extension - needs to be abstract, final or empty. 92
Parameter collection should be final. 93
Expected @param tag for 'collection'. 93
Expected @throws tag for 'RemoteException'. 94
Expected @throws tag for 'DataException'. 94
Line is longer than 80 characters (found 92). 95
Method 'getCollection' is not designed for extension - needs to be abstract, final or empty. 101
Missing a Javadoc comment. 101
Parameter collection should be final. 103
Line is longer than 80 characters (found 86). 105
Method 'getCollectionRestrictions' is not designed for extension - needs to be abstract, final or empty. 110
Missing a Javadoc comment. 110
Line is longer than 80 characters (found 122). 112
Parameter collection should be final. 112
Line has trailing spaces. 113
Line has trailing spaces. 115
Line is longer than 80 characters (found 81). 117
Line has trailing spaces. 118
Method 'updateCollection' is not designed for extension - needs to be abstract, final or empty. 122
Missing a Javadoc comment. 122
Parameter collection should be final. 123
'if' is not followed by whitespace. 125
'{' is not preceded with whitespace. 125
Method 'deleteCollection' is not designed for extension - needs to be abstract, final or empty. 131
Missing a Javadoc comment. 131
Line is longer than 80 characters (found 105). 133
Parameter collection should be final. 133
Parameter destroy should be final. 133
Method 'getUserSharings' is not designed for extension - needs to be abstract, final or empty. 145
Missing a Javadoc comment. 145
Line is longer than 80 characters (found 123). 147
Parameter collectionId should be final. 147
Method 'addUserSharings' is not designed for extension - needs to be abstract, final or empty. 153
Missing a Javadoc comment. 153
Line is longer than 80 characters (found 126). 155
Parameter collectionId should be final. 155
Parameter sharing should be final. 155
Method 'removeUserSharings' is not designed for extension - needs to be abstract, final or empty. 160
Missing a Javadoc comment. 160
Line is longer than 80 characters (found 139). 162
Parameter collectionId should be final. 162
Parameter user should be final. 162
'user' hides a field. 162
Method 'getGroupSharings' is not designed for extension - needs to be abstract, final or empty. 166
Missing a Javadoc comment. 166
Line is longer than 80 characters (found 124). 168
Parameter collectionId should be final. 168
Method 'addGroupSharings' is not designed for extension - needs to be abstract, final or empty. 174
Missing a Javadoc comment. 174
Line is longer than 80 characters (found 127). 176
Parameter collectionId should be final. 176
Parameter sharing should be final. 176
Method 'removeGroupSharings' is not designed for extension - needs to be abstract, final or empty. 181
Missing a Javadoc comment. 181
Line is longer than 80 characters (found 144). 183
Parameter collectionId should be final. 183
Parameter groupId should be final. 183
Method 'getIndexSettings' is not designed for extension - needs to be abstract, final or empty. 190
Missing a Javadoc comment. 190
Parameter collection should be final. 192
Method 'updateIndexSettings' is not designed for extension - needs to be abstract, final or empty. 197
Missing a Javadoc comment. 197
Line is longer than 80 characters (found 91). 199
Parameter collection should be final. 199
Parameter details should be final. 199
Method 'resetIndexSettings' is not designed for extension - needs to be abstract, final or empty. 204
Missing a Javadoc comment. 204
Parameter collection should be final. 206
Method 'listDataSources' is not designed for extension - needs to be abstract, final or empty. 216
Missing a Javadoc comment. 216
Line is longer than 80 characters (found 148). 218
Parameter collection should be final. 218
Parameter listing should be final. 218
Line has trailing spaces. 220
Line is longer than 80 characters (found 92). 221
Method 'createDataSource' is not designed for extension - needs to be abstract, final or empty. 237
Missing a Javadoc comment. 237
Line is longer than 80 characters (found 150). 239
Parameter collection should be final. 239
Parameter source should be final. 239
Line is longer than 80 characters (found 100). 241
Method 'getDataSource' is not designed for extension - needs to be abstract, final or empty. 247
Missing a Javadoc comment. 247
Line is longer than 80 characters (found 135). 249
Parameter collection should be final. 249
Parameter source should be final. 249
Method 'updateDataSource' is not designed for extension - needs to be abstract, final or empty. 254
Missing a Javadoc comment. 254
Line is longer than 80 characters (found 147). 256
Parameter collection should be final. 256
Parameter source should be final. 256
Parameter ds should be final. 256
Method 'deleteDataSource' is not designed for extension - needs to be abstract, final or empty. 261
Missing a Javadoc comment. 261
Line is longer than 80 characters (found 146). 263
Parameter collection should be final. 263
Parameter source should be final. 263
Method 'listDataSourceLatestReports' is not designed for extension - needs to be abstract, final or empty. 267
Missing a Javadoc comment. 267
Line is longer than 80 characters (found 176). 269
Parameter source should be final. 269
Parameter listing should be final. 269
Line is longer than 80 characters (found 137). 270
Method 'getDataSourceLatestReport' is not designed for extension - needs to be abstract, final or empty. 275
Missing a Javadoc comment. 275
Line is longer than 80 characters (found 90). 277
Parameter source should be final. 277
Line is longer than 80 characters (found 110). 280
Method 'getDataSourceSummaryReport' is not designed for extension - needs to be abstract, final or empty. 284
Missing a Javadoc comment. 284
Line is longer than 80 characters (found 91). 286
Parameter source should be final. 286
Line is longer than 80 characters (found 111). 289

org/galaxy/services/resources/ConnectorFacadeService.java

Violation Message Line
Missing a Javadoc comment. 26
Line has trailing spaces. 28
Missing a Javadoc comment. 30
Method 'sendGenericTask' is not designed for extension - needs to be abstract, final or empty. 33
Missing a Javadoc comment. 33
Line is longer than 80 characters (found 108). 34
Parameter task should be final. 34
Line has trailing spaces. 37
Unused @param tag for 'phrase'. 41
Method 'fetchDataSource' is not designed for extension - needs to be abstract, final or empty. 44
Parameter datasource should be final. 46
Expected @param tag for 'datasource'. 46
Expected @throws tag for 'RemoteException'. 47
Expected @throws tag for 'ConnectorException'. 47
Expected @throws tag for 'DataException'. 47
'{' should be on the previous line. 48
Line has trailing spaces. 51
Method 'cancelFetchDataSource' is not designed for extension - needs to be abstract, final or empty. 52
Missing a Javadoc comment. 52
Parameter datasource should be final. 54
Line has trailing spaces. 55
'{' should be on the previous line. 56
Line has trailing spaces. 59

org/galaxy/services/resources/GenericService.java

Violation Message Line
File does not end with a newline. 0
Line is longer than 80 characters (found 83). 23
Missing a Javadoc comment. 23
Method 'introduction' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Line is longer than 80 characters (found 104). 33

org/galaxy/services/resources/PreferencesService.java

Violation Message Line
Unused import - org.galaxy.search.SearchException. 13
Line has trailing spaces. 18
Missing a Javadoc comment. 25
Method 'getOptions' is not designed for extension - needs to be abstract, final or empty. 28
Missing a Javadoc comment. 28
Line is longer than 80 characters (found 90). 29
Parameter ctx should be final. 29
Line has trailing spaces. 30
'{' should be on the previous line. 31
Line has trailing spaces. 32
Line has trailing spaces. 34
Line has trailing spaces. 35
Line has trailing spaces. 41
Method 'addOption' is not designed for extension - needs to be abstract, final or empty. 45
Missing a Javadoc comment. 45
Line is longer than 80 characters (found 100). 46
Parameter ctx should be final. 46
Parameter data should be final. 46
Line has trailing spaces. 47
'{' should be on the previous line. 48
Line is longer than 80 characters (found 87). 49
Line is longer than 80 characters (found 83). 50
Line has trailing spaces. 53
Method 'batchAddOptions' is not designed for extension - needs to be abstract, final or empty. 54
Missing a Javadoc comment. 54
Line is longer than 80 characters (found 106). 55
Parameter ctx should be final. 55
Parameter data should be final. 55
Line has trailing spaces. 56
'{' should be on the previous line. 57
Line is longer than 80 characters (found 87). 58
Line is longer than 80 characters (found 83). 59
Line has trailing spaces. 62
Expected an @return tag. 72
Method 'getOption' is not designed for extension - needs to be abstract, final or empty. 72
Line is longer than 80 characters (found 118). 74
Parameter ctx should be final. 74
Expected @param tag for 'ctx'. 74
Parameter key should be final. 74
Expected @param tag for 'key'. 74
Line has trailing spaces. 75
Expected @throws tag for 'RemoteException'. 75
Expected @throws tag for 'DataException'. 75
'{' should be on the previous line. 76
Method 'setOption' is not designed for extension - needs to be abstract, final or empty. 88
Parameter ctx should be final. 91
Expected @param tag for 'ctx'. 91
Parameter key should be final. 92
Expected @param tag for 'key'. 92
Parameter value should be final. 93
Expected @param tag for 'value'. 93
Expected @throws tag for 'RemoteException'. 94
Expected @throws tag for 'DataException'. 94
Expected an @return tag. 106
Method 'setOption' is not designed for extension - needs to be abstract, final or empty. 106
Line is longer than 80 characters (found 118). 108
Parameter ctx should be final. 108
Expected @param tag for 'ctx'. 108
Parameter key should be final. 108
Expected @param tag for 'key'. 108
Line has trailing spaces. 109
Expected @throws tag for 'RemoteException'. 109
Expected @throws tag for 'DataException'. 109
'{' should be on the previous line. 110
Line has trailing spaces. 113

org/galaxy/services/resources/SearchService.java

Violation Message Line
Missing a Javadoc comment. 28
Line has trailing spaces. 30
Missing a Javadoc comment. 31
Line has trailing spaces. 33
Missing a Javadoc comment. 34
Expected an @return tag. 46
Method 'search' is not designed for extension - needs to be abstract, final or empty. 46
Parameter query should be final. 47
Expected @param tag for 'query'. 47
Expected @throws tag for 'RemoteException'. 48
Expected @throws tag for 'DataException'. 48
Expected @throws tag for 'SearchException'. 48
Method 'getSearchableCollections' is not designed for extension - needs to be abstract, final or empty. 52
Missing a Javadoc comment. 52
Line is longer than 80 characters (found 90). 54
Parameter listing should be final. 54
Line is longer than 80 characters (found 92). 56
Line has trailing spaces. 65
Line has trailing spaces. 66
Line has trailing spaces. 67
Line has trailing spaces. 69
Line has trailing spaces. 73

org/galaxy/services/resources/StatusService.java

Violation Message Line
Line has trailing spaces. 8
Line has trailing spaces. 9
Line has trailing spaces. 16
Line has trailing spaces. 19
Method 'getStatus' is not designed for extension - needs to be abstract, final or empty. 23
Line has trailing spaces. 27

org/galaxy/services/resources/WaybackService.java

Violation Message Line
File does not end with a newline. 0
Unused import - org.galaxy.search.SearchException. 12
Missing a Javadoc comment. 31
Method 'getVisualComparison' is not designed for extension - needs to be abstract, final or empty. 34
Missing a Javadoc comment. 34
Line is longer than 80 characters (found 162). 36
Parameter userId should be final. 36
Parameter collectionId should be final. 36
Parameter dataSourceId should be final. 36
'{' should be on the previous line. 38
Line is longer than 80 characters (found 96). 39
Line has trailing spaces. 41
Method 'getVisualComparison' is not designed for extension - needs to be abstract, final or empty. 42
Missing a Javadoc comment. 42
Line is longer than 80 characters (found 180). 44
Parameter userId should be final. 44
Parameter serial1 should be final. 44
Parameter serial2 should be final. 44
Parameter method should be final. 44
'{' should be on the previous line. 46
Line is longer than 80 characters (found 92). 47
Expected an @return tag. 59
Method 'getTimeline' is not designed for extension - needs to be abstract, final or empty. 59
Line has trailing spaces. 62
Parameter userId should be final. 62
Expected @param tag for 'userId'. 62
Parameter collection should be final. 63
Expected @param tag for 'collection'. 63
Parameter uuid should be final. 64
Expected @param tag for 'uuid'. 64
Expected @throws tag for 'RemoteException'. 65
Expected @throws tag for 'DataException'. 65
Line is longer than 80 characters (found 83). 66
Method 'getDetailWithCachedData' is not designed for extension - needs to be abstract, final or empty. 69
Missing a Javadoc comment. 69
Line is longer than 80 characters (found 155). 71
Parameter userId should be final. 71
Parameter collection should be final. 71
Parameter document should be final. 71
'{' should be on the previous line. 73
Line is longer than 80 characters (found 94). 74
Method 'getDetailWithOriginalData' is not designed for extension - needs to be abstract, final or empty. 77
Missing a Javadoc comment. 77
Line is longer than 80 characters (found 157). 79
Parameter userId should be final. 79
Parameter collection should be final. 79
Parameter document should be final. 79
'{' should be on the previous line. 81
Line is longer than 80 characters (found 96). 82
Method 'getDetailAsOfflineView' is not designed for extension - needs to be abstract, final or empty. 85
Missing a Javadoc comment. 85
Line is longer than 80 characters (found 247). 87
Parameter userId should be final. 87
Parameter collection should be final. 87
Parameter document should be final. 87
Parameter disableStyles should be final. 87
Parameter baseURL should be final. 87
')' is preceded with whitespace. 87
'{' should be on the previous line. 89
Line is longer than 80 characters (found 117). 90
Method 'getDocumentDetails' is not designed for extension - needs to be abstract, final or empty. 94
Missing a Javadoc comment. 94
Line is longer than 80 characters (found 114). 96
Parameter userId should be final. 96
Parameter reference should be final. 96
'{' should be on the previous line. 98
Method 'getDocumentDetailsByUUID' is not designed for extension - needs to be abstract, final or empty. 102
Missing a Javadoc comment. 102
Line is longer than 80 characters (found 150). 104
Parameter userId should be final. 104
Parameter uuid should be final. 104
Line is longer than 80 characters (found 84). 107
'(' is followed by whitespace. 107
Avoid inline conditionals. 107
')' is preceded with whitespace. 107
Method 'getComments' is not designed for extension - needs to be abstract, final or empty. 114
Missing a Javadoc comment. 114
Line is longer than 80 characters (found 145). 116
Parameter userId should be final. 116
Parameter resource should be final. 116
Parameter listing should be final. 116
'{' should be on the previous line. 118
Line is longer than 80 characters (found 81). 120
Expected an @return tag. 132
Method 'addComment' is not designed for extension - needs to be abstract, final or empty. 132
Line is longer than 80 characters (found 117). 134
Parameter userId should be final. 134
Expected @param tag for 'userId'. 134
Parameter resource should be final. 134
Expected @param tag for 'resource'. 134
Parameter comment should be final. 134
Expected @param tag for 'comment'. 134
Expected @throws tag for 'RemoteException'. 135
Expected @throws tag for 'DataException'. 135
'{' should be on the previous line. 136
Line is longer than 80 characters (found 117). 137
Method 'getComment' is not designed for extension - needs to be abstract, final or empty. 141
Missing a Javadoc comment. 141
Line is longer than 80 characters (found 138). 143
Parameter userId should be final. 143
Parameter resource should be final. 143
Parameter comment should be final. 143
'{' should be on the previous line. 145
Line is longer than 80 characters (found 83). 146

org/galaxy/services/resources/WebGraphService.java

Violation Message Line
Unused import - org.galaxy.utils.ListableSet. 10
Unused import - org.galaxy.graph.Edge. 12
Missing a Javadoc comment. 27
Expected an @return tag. 39
Method 'search' is not designed for extension - needs to be abstract, final or empty. 39
Parameter uuid should be final. 42
Expected @param tag for 'uuid'. 42
Parameter offset should be final. 43
Expected @param tag for 'offset'. 43
Parameter limit should be final. 44
Expected @param tag for 'limit'. 44
Expected @throws tag for 'RemoteException'. 45
Expected @throws tag for 'DataException'. 45
Expected @throws tag for 'SearchException'. 45
Line is longer than 80 characters (found 91). 47

org/galaxy/services/resources/package-info.java

Violation Message Line
Line has trailing spaces. 3

org/galaxy/services/utils/ShaPasswordEncoder.java

Violation Message Line
File does not end with a newline. 0
Missing package-info.java file. 0
Missing a Javadoc comment. 14
Missing a Javadoc comment. 15
Missing a Javadoc comment. 17
Missing a Javadoc comment. 21
Parameter strength should be final. 21
'strength' hides a field. 21
Method 'encodePassword' is not designed for extension - needs to be abstract, final or empty. 25
Missing a Javadoc comment. 25
Parameter rawPass should be final. 25
Parameter salt should be final. 25
Array brackets at illegal position. 31
Line is longer than 80 characters (found 87). 36
'0xff' is a magic number. 36
'0x100' is a magic number. 36
'16' is a magic number. 36
Line is longer than 80 characters (found 94). 49
Parameter algorithm should be final. 49
Expected @param tag for 'algorithm'. 49
Redundant throws: 'IllegalArgumentException' is unchecked exception. 49
Line is longer than 80 characters (found 88). 53
Missing a Javadoc comment. 57
Parameter password should be final. 57
Parameter salt should be final. 57

org/galaxy/services/utils/beans/BeanFactory.java

Violation Message Line
File does not end with a newline. 0
Unused import - java.lang.reflect.InvocationTargetException. 3
Missing a Javadoc comment. 42
Missing a Javadoc comment. 43
Line is longer than 80 characters (found 91). 54
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 54
Missing a Javadoc comment. 54
Parameter set should be final. 54
Parameter from should be final. 54
Parameter to should be final. 54
'cast' is not followed by whitespace. 64
Line has trailing spaces. 66
Line is longer than 80 characters (found 100). 78
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 78
Missing a Javadoc comment. 78
Parameter instance should be final. 78
Line is longer than 80 characters (found 101). 79
Line is longer than 80 characters (found 100). 82
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 82
Missing a Javadoc comment. 82
Parameter instance should be final. 82
Line is longer than 80 characters (found 94). 86
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 86
Missing a Javadoc comment. 86
Parameter instance should be final. 86
Line is longer than 80 characters (found 95). 87
Line is longer than 80 characters (found 94). 90
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 90
Missing a Javadoc comment. 90
Parameter instance should be final. 90
Line is longer than 80 characters (found 100). 94
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 94
Missing a Javadoc comment. 94
Parameter instance should be final. 94
Line is longer than 80 characters (found 101). 95
Line is longer than 80 characters (found 100). 98
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 98
Missing a Javadoc comment. 98
Parameter instance should be final. 98
Line is longer than 80 characters (found 106). 102
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 102
Missing a Javadoc comment. 102
Parameter instance should be final. 102
Line is longer than 80 characters (found 107). 103
Line is longer than 80 characters (found 106). 106
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 106
Missing a Javadoc comment. 106
Parameter instance should be final. 106
Line has trailing spaces. 109
Line is longer than 80 characters (found 111). 110
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 110
Missing a Javadoc comment. 110
Parameter instance should be final. 110
Line is longer than 80 characters (found 121). 111
Line is longer than 80 characters (found 111). 114
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 114
Missing a Javadoc comment. 114
Parameter instance should be final. 114
Line is longer than 80 characters (found 87). 115
Line is longer than 80 characters (found 98). 122
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 122
Missing a Javadoc comment. 122
Parameter instance should be final. 122
Line is longer than 80 characters (found 97). 123
Line is longer than 80 characters (found 98). 126
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 126
Missing a Javadoc comment. 126
Parameter instance should be final. 126
Line is longer than 80 characters (found 101). 134
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 134
Missing a Javadoc comment. 134
Parameter instance should be final. 134
Line is longer than 80 characters (found 101). 135
Line is longer than 80 characters (found 101). 138
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 138
Missing a Javadoc comment. 138
Parameter instance should be final. 138
Line is longer than 80 characters (found 92). 146
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 146
Missing a Javadoc comment. 146
Parameter instance should be final. 146
Line is longer than 80 characters (found 98). 150
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 150
Missing a Javadoc comment. 150
Parameter instance should be final. 150
Line is longer than 80 characters (found 116). 160
Line is longer than 80 characters (found 93). 173
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 173
Missing a Javadoc comment. 173
Parameter resource should be final. 173
Line is longer than 80 characters (found 97). 174
Line is longer than 80 characters (found 93). 177
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 177
Missing a Javadoc comment. 177
Parameter instance should be final. 177
Line is longer than 80 characters (found 111). 186
Line is longer than 80 characters (found 82). 188
Line is longer than 80 characters (found 124). 190
Line is longer than 80 characters (found 88). 196
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 196
Missing a Javadoc comment. 196
Parameter instance should be final. 196
Line is longer than 80 characters (found 99). 197
Line is longer than 80 characters (found 88). 200
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 200
Missing a Javadoc comment. 200
Parameter instance should be final. 200
Line has trailing spaces. 203
Line is longer than 80 characters (found 98). 208
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 208
Missing a Javadoc comment. 208
Parameter instance should be final. 208
Line is longer than 80 characters (found 101). 209
Line is longer than 80 characters (found 98). 212
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 212
Missing a Javadoc comment. 212
Parameter instance should be final. 212
Line has trailing spaces. 215
Line is longer than 80 characters (found 88). 216
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 216
Missing a Javadoc comment. 216
Parameter instance should be final. 216
Line is longer than 80 characters (found 126). 217
Line is longer than 80 characters (found 88). 220
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 220
Missing a Javadoc comment. 220
Parameter instance should be final. 220
Line is longer than 80 characters (found 103). 221
Line has trailing spaces. 223
Line is longer than 80 characters (found 86). 224
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 224
Missing a Javadoc comment. 224
Parameter instance should be final. 224
Line is longer than 80 characters (found 124). 225
Line is longer than 80 characters (found 86). 228
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 228
Missing a Javadoc comment. 228
Parameter instance should be final. 228
Line is longer than 80 characters (found 102). 229
Line has trailing spaces. 231
Line is longer than 80 characters (found 114). 236
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 236
Missing a Javadoc comment. 236
Parameter instance should be final. 236
Line is longer than 80 characters (found 110). 237
Line has trailing spaces. 239
Line is longer than 80 characters (found 118). 240
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 240
Missing a Javadoc comment. 240
Parameter instance should be final. 240
Line is longer than 80 characters (found 118). 244
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 244
Missing a Javadoc comment. 244
Parameter instance should be final. 244
Line is longer than 80 characters (found 110). 248
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 248
Missing a Javadoc comment. 248
Parameter instance should be final. 248
Line is longer than 80 characters (found 99). 249
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 270
Missing a Javadoc comment. 270
Parameter task should be final. 270
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 274
Missing a Javadoc comment. 274
Parameter task should be final. 274
Line is longer than 80 characters (found 91). 279
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 279
Missing a Javadoc comment. 279
Parameter source should be final. 279
Line is longer than 80 characters (found 101). 283
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 283
Missing a Javadoc comment. 283
Parameter source should be final. 283
Line is longer than 80 characters (found 101). 287
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 287
Missing a Javadoc comment. 287
Parameter source should be final. 287
Expected an @return tag. 301
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 301
Expected @param tag for '<S>'. 301
Expected @param tag for '<T>'. 301
Parameter source should be final. 301
Expected @param tag for 'source'. 301
Parameter type should be final. 301
Expected @param tag for 'type'. 301
Expected @throws tag for 'ConversionException'. 302
Redundant throws: 'ConversionException' is unchecked exception. 302
Line is longer than 80 characters (found 87). 306
Method 'convertBean' is not designed for extension - needs to be abstract, final or empty. 306
Missing a Javadoc comment. 306
Parameter source should be final. 306
Parameter type should be final. 306
Parameter ignoreProperties should be final. 306
'cast' is not followed by whitespace. 308

org/galaxy/services/utils/beans/BidirectionalConverter.java

Violation Message Line
Type Javadoc comment is missing an @param <B> tag. 10
Type Javadoc comment is missing an @param <P> tag. 10
Line has trailing spaces. 11
Missing a Javadoc comment. 12
Redundant 'public' modifier. 12
Line has trailing spaces. 13
Missing a Javadoc comment. 14
Redundant 'public' modifier. 14
Line has trailing spaces. 15

org/galaxy/services/utils/beans/TaskDataConverter.java

Violation Message Line
Line is longer than 80 characters (found 82). 13
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 15
Parameter instance should be final. 16
Line is longer than 80 characters (found 82). 30
Method 'convert' is not designed for extension - needs to be abstract, final or empty. 36
Parameter instance should be final. 37
Line has trailing spaces. 47
Line has trailing spaces. 48
Line has trailing spaces. 52
Line has trailing spaces. 54
Line is longer than 80 characters (found 88). 55

org/galaxy/services/utils/beans/package-info.java

Violation Message Line
Line has trailing spaces. 4