Checkstyle Results

The following document contains the results of Checkstyle.

Summary

Files	Infos	Warnings	Errors
56	0	0	2060

Files

Files	I	W	E
org/galaxy/services/beans/AbstractAccountEntity.java	0	0	38
org/galaxy/services/beans/AbstractDataStub.java	0	0	13
org/galaxy/services/beans/AbstractPaginable.java	0	0	59
org/galaxy/services/beans/AccessRights.java	0	0	44
org/galaxy/services/beans/AvailableServices.java	0	0	19
org/galaxy/services/beans/Cabinet.java	0	0	63
org/galaxy/services/beans/Capability.java	0	0	2
org/galaxy/services/beans/Collection.java	0	0	94
org/galaxy/services/beans/Collections.java	0	0	6
org/galaxy/services/beans/Comment.java	0	0	33
org/galaxy/services/beans/Comments.java	0	0	1
org/galaxy/services/beans/CommonTask.java	0	0	27
org/galaxy/services/beans/Crawler.java	0	0	33
org/galaxy/services/beans/CrawlerTask.java	0	0	67
org/galaxy/services/beans/CrawlerTaskStats.java	0	0	92
org/galaxy/services/beans/DataSource.java	0	0	88
org/galaxy/services/beans/DataSourceStatePair.java	0	0	23
org/galaxy/services/beans/DataSourceStatePairs.java	0	0	29
org/galaxy/services/beans/DataSourceTaskReport.java	0	0	87
org/galaxy/services/beans/DirectoryFiles.java	0	0	21
org/galaxy/services/beans/DiskUsage.java	0	0	36
org/galaxy/services/beans/GraphEdge.java	0	0	22
org/galaxy/services/beans/Group.java	0	0	9
org/galaxy/services/beans/IndexSettings.java	0	0	102
org/galaxy/services/beans/LocalPathDetail.java	0	0	34
org/galaxy/services/beans/Message.java	0	0	15
org/galaxy/services/beans/PaginableSet.java	0	0	122
org/galaxy/services/beans/Preference.java	0	0	41
org/galaxy/services/beans/Preferences.java	0	0	23
org/galaxy/services/beans/RegisteredSystem.java	0	0	36
org/galaxy/services/beans/RegisteredSystems.java	0	0	22
org/galaxy/services/beans/Resource.java	0	0	117
org/galaxy/services/beans/Schema.java	0	0	3
org/galaxy/services/beans/SearchHit.java	0	0	72
org/galaxy/services/beans/SearchQuery.java	0	0	40
org/galaxy/services/beans/SearchResult.java	0	0	55
org/galaxy/services/beans/ServiceFailure.java	0	0	32
org/galaxy/services/beans/ServiceFailureTypes.java	0	0	2
org/galaxy/services/beans/ServiceStatus.java	0	0	25
org/galaxy/services/beans/Sharing.java	0	0	44
org/galaxy/services/beans/Suggestion.java	0	0	39
org/galaxy/services/beans/TaskBody.java	0	0	40
org/galaxy/services/beans/TaskData.java	0	0	29
org/galaxy/services/beans/TaskHeader.java	0	0	69
org/galaxy/services/beans/TaskKey.java	0	0	45
org/galaxy/services/beans/Timeline.java	0	0	30
org/galaxy/services/beans/TimelineEntry.java	0	0	35
org/galaxy/services/beans/User.java	0	0	34
org/galaxy/services/beans/XmlBean.java	0	0	3
org/galaxy/services/beans/package-info.java	0	0	2
org/galaxy/services/beans/utils/InvalidXmlCharactersAdapter.java	0	0	7
org/galaxy/services/beans/utils/MapAdapter.java	0	0	12
org/galaxy/services/beans/utils/MapEntryType.java	0	0	7
org/galaxy/services/beans/utils/MapType.java	0	0	3
org/galaxy/services/beans/utils/XMLHelper.java	0	0	13
org/galaxy/services/beans/utils/package-info.java	0	0	1

Rules

Rules	Violations	Severity
JavadocPackage allowLegacy: `"true"`	0	Error
NewlineAtEndOfFile	20	Error
Translation	0	Error
FileLength	0	Error
FileTabCharacter eachLine: `"true"`	0	Error
RegexpSingleline message: `"Line has trailing spaces."` format: `"\s+$"`	242	Error
JavadocMethod	446	Error
JavadocType	4	Error
JavadocVariable	189	Error
JavadocStyle	6	Error
ConstantName	0	Error
LocalFinalVariableName	0	Error
LocalVariableName	0	Error
MemberName	0	Error
MethodName	0	Error
PackageName	0	Error
ParameterName	0	Error
StaticVariableName	0	Error
TypeName	0	Error
AvoidStarImport	0	Error
IllegalImport	0	Error
RedundantImport	0	Error
UnusedImports	9	Error
LineLength	37	Error
MethodLength	0	Error
ParameterNumber	0	Error
EmptyForIteratorPad	0	Error
MethodParamPad	0	Error
NoWhitespaceAfter	0	Error
NoWhitespaceBefore	1	Error
OperatorWrap	0	Error
ParenPad	3	Error
TypecastParenPad	0	Error
WhitespaceAfter	2	Error
WhitespaceAround	117	Error
ModifierOrder	0	Error
RedundantModifier	0	Error
AvoidNestedBlocks	0	Error
EmptyBlock	0	Error
LeftCurly	0	Error
NeedBraces	0	Error
RightCurly	0	Error
AvoidInlineConditionals	3	Error
EmptyStatement	0	Error
EqualsHashCode	0	Error
HiddenField	251	Error
IllegalInstantiation	0	Error
InnerAssignment	0	Error
MagicNumber	19	Error
MissingSwitchDefault	0	Error
RedundantThrows	0	Error
SimplifyBooleanExpression	0	Error
SimplifyBooleanReturn	0	Error
DesignForExtension	420	Error
FinalClass	0	Error
HideUtilityClassConstructor	1	Error
InterfaceIsType	0	Error
VisibilityModifier	3	Error
ArrayTypeStyle	0	Error
FinalParameters	269	Error
TodoComment	0	Error
UpperEll	18	Error

Details

org/galaxy/services/beans/AbstractAccountEntity.java

Violation	Message	Line
	File does not end with a newline.	0
	Line is longer than 80 characters (found 89).	11
	'}' is not preceded with whitespace.	11
	Line has trailing spaces.	51
	Line has trailing spaces.	55
	Parameter id should be final.	70
	Expected @param tag for 'id'.	70
	Method 'getName' is not designed for extension - needs to be abstract, final or empty.	74
	Missing a Javadoc comment.	74
	Method 'setName' is not designed for extension - needs to be abstract, final or empty.	78
	Missing a Javadoc comment.	78
	Parameter name should be final.	78
	'name' hides a field.	78
	Method 'getDescription' is not designed for extension - needs to be abstract, final or empty.	82
	Missing a Javadoc comment.	82
	Method 'setDescription' is not designed for extension - needs to be abstract, final or empty.	86
	Missing a Javadoc comment.	86
	Parameter description should be final.	86
	'description' hides a field.	86
	Method 'getDateCreated' is not designed for extension - needs to be abstract, final or empty.	90
	Missing a Javadoc comment.	90
	Method 'setDateCreated' is not designed for extension - needs to be abstract, final or empty.	94
	Missing a Javadoc comment.	94
	Parameter dateCreated should be final.	94
	'dateCreated' hides a field.	94
	Method 'getDateModified' is not designed for extension - needs to be abstract, final or empty.	98
	Missing a Javadoc comment.	98
	Method 'setDateModified' is not designed for extension - needs to be abstract, final or empty.	102
	Missing a Javadoc comment.	102
	Parameter dateModified should be final.	102
	'dateModified' hides a field.	102
	Method 'isPermanent' is not designed for extension - needs to be abstract, final or empty.	106
	Missing a Javadoc comment.	106
	Method 'setPermanent' is not designed for extension - needs to be abstract, final or empty.	110
	Missing a Javadoc comment.	110
	Parameter permanent should be final.	110
	'permanent' hides a field.	110
	Line has trailing spaces.	113

org/galaxy/services/beans/AbstractDataStub.java

Violation	Message	Line
	File does not end with a newline.	0
	Missing a Javadoc comment.	14
	Missing a Javadoc comment.	22
	Unused @param tag for 'id'.	36
	Expected @param tag for 'entryId'.	39
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	49
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	59
	Parameter id should be final.	59
	'id' hides a field.	59
	Method 'equals' is not designed for extension - needs to be abstract, final or empty.	63
	Parameter obj should be final.	64
	'cast' is not followed by whitespace.	69
	Method 'hashCode' is not designed for extension - needs to be abstract, final or empty.	74

org/galaxy/services/beans/AbstractPaginable.java

Violation	Message	Line
	Line has trailing spaces.	9
	Unused Javadoc tag.	10
	Type Javadoc comment is missing an @param <T> tag.	14
	Missing a Javadoc comment.	18
	Line has trailing spaces.	19
	Missing a Javadoc comment.	21
	Line has trailing spaces.	22
	Missing a Javadoc comment.	24
	'10' is a magic number.	24
	Line has trailing spaces.	25
	Missing a Javadoc comment.	27
	Line has trailing spaces.	28
	Missing a Javadoc comment.	30
	Missing a Javadoc comment.	33
	Line has trailing spaces.	37
	'10' is a magic number.	41
	Line is longer than 80 characters (found 98).	44
	Missing a Javadoc comment.	44
	Parameter offset should be final.	44
	'offset' hides a field.	44
	Parameter limit should be final.	44
	'limit' hides a field.	44
	Parameter total should be final.	44
	'total' hides a field.	44
	Parameter displayable should be final.	44
	'displayable' hides a field.	44
	Parameter entries should be final.	44
	'entries' hides a field.	44
	Method 'getOffset' is not designed for extension - needs to be abstract, final or empty.	52
	Missing a Javadoc comment.	52
	Method 'setOffset' is not designed for extension - needs to be abstract, final or empty.	56
	Missing a Javadoc comment.	56
	Parameter offset should be final.	56
	'offset' hides a field.	56
	Method 'getLimit' is not designed for extension - needs to be abstract, final or empty.	60
	Missing a Javadoc comment.	60
	Method 'setLimit' is not designed for extension - needs to be abstract, final or empty.	64
	Missing a Javadoc comment.	64
	Parameter limit should be final.	64
	'limit' hides a field.	64
	Method 'getTotal' is not designed for extension - needs to be abstract, final or empty.	68
	Missing a Javadoc comment.	68
	Method 'setTotal' is not designed for extension - needs to be abstract, final or empty.	72
	Missing a Javadoc comment.	72
	Parameter total should be final.	72
	'total' hides a field.	72
	Method 'getDisplayable' is not designed for extension - needs to be abstract, final or empty.	76
	Missing a Javadoc comment.	76
	Method 'setDisplayable' is not designed for extension - needs to be abstract, final or empty.	80
	Missing a Javadoc comment.	80
	Parameter displayable should be final.	80
	'displayable' hides a field.	80
	Method 'getEntries' is not designed for extension - needs to be abstract, final or empty.	84
	Missing a Javadoc comment.	84
	Method 'setEntries' is not designed for extension - needs to be abstract, final or empty.	88
	Missing a Javadoc comment.	88
	Parameter entries should be final.	88
	'entries' hides a field.	88
	Line has trailing spaces.	91

org/galaxy/services/beans/AccessRights.java

Violation	Message	Line
	File does not end with a newline.	0
	'=' is not preceded with whitespace.	11
	'=' is not followed by whitespace.	11
	'}' is not preceded with whitespace.	12
	Missing a Javadoc comment.	16
	Missing a Javadoc comment.	19
	Missing a Javadoc comment.	22
	Missing a Javadoc comment.	24
	Line has trailing spaces.	25
	Missing a Javadoc comment.	26
	Line has trailing spaces.	27
	Line has trailing spaces.	28
	Missing a Javadoc comment.	38
	Parameter entityId should be final.	38
	'entityId' hides a field.	38
	Parameter userId should be final.	38
	'userId' hides a field.	38
	Line has trailing spaces.	42
	Method 'getEntityId' is not designed for extension - needs to be abstract, final or empty.	43
	Missing a Javadoc comment.	43
	Method 'setEntityId' is not designed for extension - needs to be abstract, final or empty.	47
	Missing a Javadoc comment.	47
	Parameter entityId should be final.	47
	'entityId' hides a field.	47
	Method 'getUserId' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Method 'setUserId' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Parameter userId should be final.	55
	'userId' hides a field.	55
	Method 'isCanRead' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	Method 'setCanRead' is not designed for extension - needs to be abstract, final or empty.	63
	Missing a Javadoc comment.	63
	Parameter canRead should be final.	63
	'canRead' hides a field.	63
	Method 'isCanWrite' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Method 'setCanWrite' is not designed for extension - needs to be abstract, final or empty.	71
	Missing a Javadoc comment.	71
	Parameter canWrite should be final.	71
	'canWrite' hides a field.	71
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	75
	Line is longer than 80 characters (found 137).	77

org/galaxy/services/beans/AvailableServices.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Line has trailing spaces.	14
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	24
	First sentence should end with a period.	27
	Line has trailing spaces.	29
	Missing a Javadoc comment.	36
	Parameter services should be final.	36
	Method 'getServices' is not designed for extension - needs to be abstract, final or empty.	41
	Missing a Javadoc comment.	41
	'=' is not preceded with whitespace.	41
	'=' is not followed by whitespace.	41
	'=' is not preceded with whitespace.	42
	'=' is not followed by whitespace.	42
	Method 'setServices' is not designed for extension - needs to be abstract, final or empty.	47
	Missing a Javadoc comment.	47
	Parameter services should be final.	47
	Line has trailing spaces.	50

org/galaxy/services/beans/Cabinet.java

Violation	Message	Line
	Line has trailing spaces.	13
	Line is longer than 80 characters (found 82).	13
	Missing a Javadoc comment.	18
	Line has trailing spaces.	19
	Missing a Javadoc comment.	21
	Line has trailing spaces.	22
	Missing a Javadoc comment.	24
	Line has trailing spaces.	25
	Missing a Javadoc comment.	27
	Missing a Javadoc comment.	30
	Line has trailing spaces.	31
	Missing a Javadoc comment.	33
	Line has trailing spaces.	34
	Missing a Javadoc comment.	36
	Line has trailing spaces.	37
	Missing a Javadoc comment.	39
	Line has trailing spaces.	40
	Line has trailing spaces.	43
	Missing a Javadoc comment.	50
	Parameter id should be final.	50
	Method 'getOwner' is not designed for extension - needs to be abstract, final or empty.	54
	Missing a Javadoc comment.	54
	Method 'setOwner' is not designed for extension - needs to be abstract, final or empty.	58
	Missing a Javadoc comment.	58
	Parameter owner should be final.	58
	'owner' hides a field.	58
	Method 'getName' is not designed for extension - needs to be abstract, final or empty.	62
	Missing a Javadoc comment.	62
	Method 'setName' is not designed for extension - needs to be abstract, final or empty.	66
	Missing a Javadoc comment.	66
	Parameter name should be final.	66
	'name' hides a field.	66
	Method 'getDescription' is not designed for extension - needs to be abstract, final or empty.	70
	Missing a Javadoc comment.	70
	Method 'setDescription' is not designed for extension - needs to be abstract, final or empty.	74
	Missing a Javadoc comment.	74
	Parameter description should be final.	74
	'description' hides a field.	74
	Method 'getDateCreated' is not designed for extension - needs to be abstract, final or empty.	78
	Missing a Javadoc comment.	78
	Method 'setDateCreated' is not designed for extension - needs to be abstract, final or empty.	82
	Missing a Javadoc comment.	82
	Parameter dateCreated should be final.	82
	'dateCreated' hides a field.	82
	Method 'getDateModified' is not designed for extension - needs to be abstract, final or empty.	86
	Missing a Javadoc comment.	86
	Method 'setDateModified' is not designed for extension - needs to be abstract, final or empty.	90
	Missing a Javadoc comment.	90
	Parameter dateModified should be final.	90
	'dateModified' hides a field.	90
	Method 'getSize' is not designed for extension - needs to be abstract, final or empty.	94
	Missing a Javadoc comment.	94
	Method 'setSize' is not designed for extension - needs to be abstract, final or empty.	98
	Missing a Javadoc comment.	98
	Parameter size should be final.	98
	'size' hides a field.	98
	Method 'getPath' is not designed for extension - needs to be abstract, final or empty.	102
	Missing a Javadoc comment.	102
	Method 'setPath' is not designed for extension - needs to be abstract, final or empty.	106
	Missing a Javadoc comment.	106
	Parameter path should be final.	106
	'path' hides a field.	106
	Line has trailing spaces.	109

org/galaxy/services/beans/Capability.java

Violation	Message	Line
	File does not end with a newline.	0
	Parameter id should be final.	36

org/galaxy/services/beans/Collection.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Line has trailing spaces.	9
	Line has trailing spaces.	15
	Line has trailing spaces.	16
	Line is longer than 80 characters (found 82).	16
	Line has trailing spaces.	20
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	25
	Line has trailing spaces.	26
	Missing a Javadoc comment.	28
	Line has trailing spaces.	29
	Missing a Javadoc comment.	31
	Missing a Javadoc comment.	34
	Missing a Javadoc comment.	37
	Line has trailing spaces.	38
	Missing a Javadoc comment.	40
	Missing a Javadoc comment.	43
	Missing a Javadoc comment.	46
	Line has trailing spaces.	47
	Missing a Javadoc comment.	49
	Line has trailing spaces.	50
	Missing a Javadoc comment.	52
	Missing a Javadoc comment.	55
	Line has trailing spaces.	59
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	66
	Missing a Javadoc comment.	66
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	70
	Missing a Javadoc comment.	70
	Parameter id should be final.	70
	'id' hides a field.	70
	Method 'getOwner' is not designed for extension - needs to be abstract, final or empty.	74
	Missing a Javadoc comment.	74
	Method 'setOwner' is not designed for extension - needs to be abstract, final or empty.	78
	Missing a Javadoc comment.	78
	Parameter owner should be final.	78
	'owner' hides a field.	78
	Method 'getName' is not designed for extension - needs to be abstract, final or empty.	82
	Missing a Javadoc comment.	82
	Method 'setName' is not designed for extension - needs to be abstract, final or empty.	86
	Missing a Javadoc comment.	86
	Parameter name should be final.	86
	'name' hides a field.	86
	Method 'getDescription' is not designed for extension - needs to be abstract, final or empty.	90
	Missing a Javadoc comment.	90
	Method 'setDescription' is not designed for extension - needs to be abstract, final or empty.	94
	Missing a Javadoc comment.	94
	Parameter description should be final.	94
	'description' hides a field.	94
	Method 'getDirectory' is not designed for extension - needs to be abstract, final or empty.	98
	Missing a Javadoc comment.	98
	Method 'setDirectory' is not designed for extension - needs to be abstract, final or empty.	102
	Missing a Javadoc comment.	102
	Parameter directory should be final.	102
	'directory' hides a field.	102
	Method 'getDateCreated' is not designed for extension - needs to be abstract, final or empty.	106
	Missing a Javadoc comment.	106
	Method 'setDateCreated' is not designed for extension - needs to be abstract, final or empty.	110
	Missing a Javadoc comment.	110
	Parameter dateCreated should be final.	110
	'dateCreated' hides a field.	110
	Method 'getDateModified' is not designed for extension - needs to be abstract, final or empty.	114
	Missing a Javadoc comment.	114
	Method 'setDateModified' is not designed for extension - needs to be abstract, final or empty.	118
	Missing a Javadoc comment.	118
	Parameter dateModified should be final.	118
	'dateModified' hides a field.	118
	Method 'getDiskUsage' is not designed for extension - needs to be abstract, final or empty.	122
	Missing a Javadoc comment.	122
	Method 'setDiskUsage' is not designed for extension - needs to be abstract, final or empty.	126
	Missing a Javadoc comment.	126
	Parameter diskUsage should be final.	126
	'diskUsage' hides a field.	126
	Method 'getDataSourcesCount' is not designed for extension - needs to be abstract, final or empty.	130
	Missing a Javadoc comment.	130
	Method 'setDataSourcesCount' is not designed for extension - needs to be abstract, final or empty.	134
	Missing a Javadoc comment.	134
	Parameter dataSourcesCount should be final.	134
	'dataSourcesCount' hides a field.	134
	Method 'getDocumentsCount' is not designed for extension - needs to be abstract, final or empty.	138
	Missing a Javadoc comment.	138
	Method 'setDocumentsCount' is not designed for extension - needs to be abstract, final or empty.	142
	Missing a Javadoc comment.	142
	Parameter documentsCount should be final.	142
	'documentsCount' hides a field.	142
	Method 'getDocumentsIndexedCount' is not designed for extension - needs to be abstract, final or empty.	146
	Missing a Javadoc comment.	146
	Method 'setDocumentsIndexedCount' is not designed for extension - needs to be abstract, final or empty.	150
	Missing a Javadoc comment.	150
	Parameter documentsIndexedCount should be final.	150
	'documentsIndexedCount' hides a field.	150
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	154
	Line is longer than 80 characters (found 88).	156
	Line has trailing spaces.	158

org/galaxy/services/beans/Collections.java

Violation	Message	Line
	Line has trailing spaces.	7
	Line has trailing spaces.	13
	Missing a Javadoc comment.	15
	Line has trailing spaces.	16
	Line has trailing spaces.	19
	Line has trailing spaces.	25

org/galaxy/services/beans/Comment.java

Violation	Message	Line
	File does not end with a newline.	0
	'}' is not preceded with whitespace.	13
	First sentence should end with a period.	16
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	71
	Missing a Javadoc comment.	71
	Parameter id should be final.	71
	'id' hides a field.	71
	Method 'getResource' is not designed for extension - needs to be abstract, final or empty.	75
	Missing a Javadoc comment.	75
	Method 'setResource' is not designed for extension - needs to be abstract, final or empty.	79
	Missing a Javadoc comment.	79
	Parameter resource should be final.	79
	'resource' hides a field.	79
	Method 'getAuthor' is not designed for extension - needs to be abstract, final or empty.	83
	Missing a Javadoc comment.	83
	Method 'setAuthor' is not designed for extension - needs to be abstract, final or empty.	87
	Missing a Javadoc comment.	87
	Parameter author should be final.	87
	'author' hides a field.	87
	Method 'getCreated' is not designed for extension - needs to be abstract, final or empty.	91
	Missing a Javadoc comment.	91
	Method 'setCreated' is not designed for extension - needs to be abstract, final or empty.	95
	Missing a Javadoc comment.	95
	Parameter created should be final.	95
	'created' hides a field.	95
	Method 'getComment' is not designed for extension - needs to be abstract, final or empty.	99
	Missing a Javadoc comment.	99
	Method 'setComment' is not designed for extension - needs to be abstract, final or empty.	103
	Missing a Javadoc comment.	103
	Parameter comment should be final.	103
	'comment' hides a field.	103

org/galaxy/services/beans/Comments.java

Violation	Message	Line
	First sentence should end with a period.	14

org/galaxy/services/beans/CommonTask.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Line has trailing spaces.	14
	Missing a Javadoc comment.	23
	Line has trailing spaces.	24
	Missing a Javadoc comment.	26
	Line has trailing spaces.	27
	Missing a Javadoc comment.	29
	Line has trailing spaces.	34
	Missing a Javadoc comment.	41
	Parameter type should be final.	41
	'type' hides a field.	41
	Parameter settings should be final.	41
	'settings' hides a field.	41
	Method 'getType' is not designed for extension - needs to be abstract, final or empty.	46
	Missing a Javadoc comment.	46
	Method 'setType' is not designed for extension - needs to be abstract, final or empty.	50
	Missing a Javadoc comment.	50
	Parameter type should be final.	50
	'type' hides a field.	50
	Line has trailing spaces.	53
	Method 'getSettings' is not designed for extension - needs to be abstract, final or empty.	54
	Missing a Javadoc comment.	54
	Method 'setSettings' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	Parameter settings should be final.	59
	'settings' hides a field.	59
	Line has trailing spaces.	62

org/galaxy/services/beans/Crawler.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	'}' is not preceded with whitespace.	17
	Missing a Javadoc comment.	21
	Line has trailing spaces.	22
	Missing a Javadoc comment.	23
	Missing a Javadoc comment.	26
	Missing a Javadoc comment.	29
	Missing a Javadoc comment.	33
	Parameter systems should be final.	33
	'systems' hides a field.	33
	Parameter services should be final.	33
	'services' hides a field.	33
	Method 'getServices' is not designed for extension - needs to be abstract, final or empty.	38
	Missing a Javadoc comment.	38
	'=' is not preceded with whitespace.	38
	'=' is not followed by whitespace.	38
	'=' is not preceded with whitespace.	39
	'=' is not followed by whitespace.	39
	Method 'setServices' is not designed for extension - needs to be abstract, final or empty.	44
	Missing a Javadoc comment.	44
	Parameter services should be final.	44
	'services' hides a field.	44
	Method 'getSystems' is not designed for extension - needs to be abstract, final or empty.	48
	Missing a Javadoc comment.	48
	'=' is not preceded with whitespace.	48
	'=' is not followed by whitespace.	48
	'=' is not preceded with whitespace.	49
	'=' is not followed by whitespace.	49
	Method 'setSystems' is not designed for extension - needs to be abstract, final or empty.	54
	Missing a Javadoc comment.	54
	Parameter systems should be final.	54
	'systems' hides a field.	54
	Line has trailing spaces.	57

org/galaxy/services/beans/CrawlerTask.java

Violation	Message	Line
	File does not end with a newline.	0
	Line is longer than 80 characters (found 107).	13
	'}' is not preceded with whitespace.	13
	Missing a Javadoc comment.	17
	Missing a Javadoc comment.	18
	Should use uppercase 'L'.	18
	Missing a Javadoc comment.	19
	Should use uppercase 'L'.	19
	Missing a Javadoc comment.	20
	Should use uppercase 'L'.	20
	Missing a Javadoc comment.	21
	Should use uppercase 'L'.	21
	Missing a Javadoc comment.	22
	Missing a Javadoc comment.	23
	Missing a Javadoc comment.	24
	Missing a Javadoc comment.	25
	Missing a Javadoc comment.	27
	Method 'getOwnerId' is not designed for extension - needs to be abstract, final or empty.	31
	Missing a Javadoc comment.	31
	Method 'setOwnerId' is not designed for extension - needs to be abstract, final or empty.	35
	Missing a Javadoc comment.	35
	Parameter ownerId should be final.	35
	'ownerId' hides a field.	35
	Method 'getTargetId' is not designed for extension - needs to be abstract, final or empty.	39
	Missing a Javadoc comment.	39
	Method 'setTargetId' is not designed for extension - needs to be abstract, final or empty.	43
	Missing a Javadoc comment.	43
	Parameter targetId should be final.	43
	'targetId' hides a field.	43
	Method 'getStartAt' is not designed for extension - needs to be abstract, final or empty.	47
	Missing a Javadoc comment.	47
	Method 'setStartAt' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Parameter startAt should be final.	51
	'startAt' hides a field.	51
	Method 'getCancelAt' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Method 'setCancelAt' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	Parameter cancelAt should be final.	59
	'cancelAt' hides a field.	59
	Method 'getCollectionId' is not designed for extension - needs to be abstract, final or empty.	63
	Missing a Javadoc comment.	63
	Method 'setCollectionId' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Parameter collectionId should be final.	67
	'collectionId' hides a field.	67
	Line has trailing spaces.	70
	Method 'getDataSourceId' is not designed for extension - needs to be abstract, final or empty.	71
	Missing a Javadoc comment.	71
	Method 'setDataSourceId' is not designed for extension - needs to be abstract, final or empty.	75
	Missing a Javadoc comment.	75
	Parameter dataSourceId should be final.	75
	'dataSourceId' hides a field.	75
	Method 'getProcessSerial' is not designed for extension - needs to be abstract, final or empty.	79
	Missing a Javadoc comment.	79
	Method 'setProcessSerial' is not designed for extension - needs to be abstract, final or empty.	83
	Missing a Javadoc comment.	83
	Parameter processSerial should be final.	83
	'processSerial' hides a field.	83
	Method 'getData' is not designed for extension - needs to be abstract, final or empty.	87
	Missing a Javadoc comment.	87
	Method 'setData' is not designed for extension - needs to be abstract, final or empty.	91
	Missing a Javadoc comment.	91
	Parameter data should be final.	91
	'data' hides a field.	91
	Line has trailing spaces.	94

org/galaxy/services/beans/CrawlerTaskStats.java

Violation	Message	Line
	Line is longer than 80 characters (found 130).	13
	Missing a Javadoc comment.	18
	Line has trailing spaces.	19
	Missing a Javadoc comment.	20
	Should use uppercase 'L'.	20
	Missing a Javadoc comment.	21
	Should use uppercase 'L'.	21
	Missing a Javadoc comment.	22
	Should use uppercase 'L'.	22
	Missing a Javadoc comment.	23
	Should use uppercase 'L'.	23
	Missing a Javadoc comment.	24
	Should use uppercase 'L'.	24
	Missing a Javadoc comment.	25
	Should use uppercase 'L'.	25
	Missing a Javadoc comment.	26
	Should use uppercase 'L'.	26
	Missing a Javadoc comment.	27
	Should use uppercase 'L'.	27
	Missing a Javadoc comment.	28
	Should use uppercase 'L'.	28
	Missing a Javadoc comment.	29
	Should use uppercase 'L'.	29
	Missing a Javadoc comment.	30
	Missing a Javadoc comment.	32
	Method 'getSystemId' is not designed for extension - needs to be abstract, final or empty.	35
	Missing a Javadoc comment.	35
	Method 'setSystemId' is not designed for extension - needs to be abstract, final or empty.	39
	Missing a Javadoc comment.	39
	Parameter systemId should be final.	39
	'systemId' hides a field.	39
	Method 'getParentId' is not designed for extension - needs to be abstract, final or empty.	43
	Missing a Javadoc comment.	43
	Method 'setParentId' is not designed for extension - needs to be abstract, final or empty.	47
	Missing a Javadoc comment.	47
	Parameter parentId should be final.	47
	'parentId' hides a field.	47
	Method 'getSerialId' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Method 'setSerialId' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Parameter serialId should be final.	55
	'serialId' hides a field.	55
	Method 'getAccepted' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	Method 'setAccepted' is not designed for extension - needs to be abstract, final or empty.	63
	Missing a Javadoc comment.	63
	Parameter accepted should be final.	63
	'accepted' hides a field.	63
	Method 'getNewcomers' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Method 'setNewcomers' is not designed for extension - needs to be abstract, final or empty.	71
	Missing a Javadoc comment.	71
	Parameter newcomers should be final.	71
	'newcomers' hides a field.	71
	Method 'getUnique' is not designed for extension - needs to be abstract, final or empty.	75
	Missing a Javadoc comment.	75
	Method 'setUnique' is not designed for extension - needs to be abstract, final or empty.	79
	Missing a Javadoc comment.	79
	Parameter unique should be final.	79
	'unique' hides a field.	79
	Method 'getProcessed' is not designed for extension - needs to be abstract, final or empty.	83
	Missing a Javadoc comment.	83
	Method 'setProcessed' is not designed for extension - needs to be abstract, final or empty.	87
	Missing a Javadoc comment.	87
	Parameter processed should be final.	87
	'processed' hides a field.	87
	Method 'getFailed' is not designed for extension - needs to be abstract, final or empty.	91
	Missing a Javadoc comment.	91
	Method 'setFailed' is not designed for extension - needs to be abstract, final or empty.	95
	Missing a Javadoc comment.	95
	Parameter failed should be final.	95
	'failed' hides a field.	95
	Method 'getWrittenAt' is not designed for extension - needs to be abstract, final or empty.	99
	Missing a Javadoc comment.	99
	Method 'setWrittenAt' is not designed for extension - needs to be abstract, final or empty.	103
	Missing a Javadoc comment.	103
	Parameter writtenAt should be final.	103
	'writtenAt' hides a field.	103
	Method 'getMessage' is not designed for extension - needs to be abstract, final or empty.	107
	Missing a Javadoc comment.	107
	Method 'setMessage' is not designed for extension - needs to be abstract, final or empty.	111
	Missing a Javadoc comment.	111
	Parameter message should be final.	111
	'message' hides a field.	111
	Method 'getStatus' is not designed for extension - needs to be abstract, final or empty.	115
	Missing a Javadoc comment.	115
	Method 'setStatus' is not designed for extension - needs to be abstract, final or empty.	119
	Missing a Javadoc comment.	119
	Parameter status should be final.	119
	'status' hides a field.	119
	Line has trailing spaces.	122

org/galaxy/services/beans/DataSource.java

Violation	Message	Line
	File does not end with a newline.	0
	'=' is not preceded with whitespace.	15
	'=' is not followed by whitespace.	15
	Line is longer than 80 characters (found 141).	16
	'}' is not preceded with whitespace.	16
	Missing a Javadoc comment.	20
	Missing a Javadoc comment.	23
	Missing a Javadoc comment.	26
	Missing a Javadoc comment.	29
	Missing a Javadoc comment.	32
	Missing a Javadoc comment.	35
	Missing a Javadoc comment.	38
	Missing a Javadoc comment.	41
	Missing a Javadoc comment.	44
	Missing a Javadoc comment.	47
	Missing a Javadoc comment.	50
	Missing a Javadoc comment.	53
	Missing a Javadoc comment.	65
	Parameter type should be final.	65
	'type' hides a field.	65
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	69
	Missing a Javadoc comment.	69
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	73
	Missing a Javadoc comment.	73
	Parameter id should be final.	73
	'id' hides a field.	73
	Method 'getOwner' is not designed for extension - needs to be abstract, final or empty.	77
	Missing a Javadoc comment.	77
	Method 'setOwner' is not designed for extension - needs to be abstract, final or empty.	81
	Missing a Javadoc comment.	81
	Parameter owner should be final.	81
	'owner' hides a field.	81
	Method 'getCollection' is not designed for extension - needs to be abstract, final or empty.	85
	Missing a Javadoc comment.	85
	Method 'setCollection' is not designed for extension - needs to be abstract, final or empty.	89
	Missing a Javadoc comment.	89
	Parameter collection should be final.	89
	'collection' hides a field.	89
	Method 'getName' is not designed for extension - needs to be abstract, final or empty.	93
	Missing a Javadoc comment.	93
	Method 'setName' is not designed for extension - needs to be abstract, final or empty.	97
	Missing a Javadoc comment.	97
	Parameter name should be final.	97
	'name' hides a field.	97
	Method 'getDescription' is not designed for extension - needs to be abstract, final or empty.	101
	Missing a Javadoc comment.	101
	Method 'setDescription' is not designed for extension - needs to be abstract, final or empty.	105
	Missing a Javadoc comment.	105
	Parameter description should be final.	105
	'description' hides a field.	105
	Method 'getType' is not designed for extension - needs to be abstract, final or empty.	109
	Missing a Javadoc comment.	109
	Method 'setType' is not designed for extension - needs to be abstract, final or empty.	113
	Missing a Javadoc comment.	113
	Parameter type should be final.	113
	'type' hides a field.	113
	Method 'getMeta' is not designed for extension - needs to be abstract, final or empty.	117
	Missing a Javadoc comment.	117
	Method 'setMeta' is not designed for extension - needs to be abstract, final or empty.	122
	Missing a Javadoc comment.	122
	Parameter meta should be final.	122
	'meta' hides a field.	122
	Method 'getStatus' is not designed for extension - needs to be abstract, final or empty.	126
	Missing a Javadoc comment.	126
	Method 'setStatus' is not designed for extension - needs to be abstract, final or empty.	130
	Missing a Javadoc comment.	130
	Parameter status should be final.	130
	'status' hides a field.	130
	Method 'getLastExecution' is not designed for extension - needs to be abstract, final or empty.	134
	Missing a Javadoc comment.	134
	Method 'setLastExecution' is not designed for extension - needs to be abstract, final or empty.	138
	Missing a Javadoc comment.	138
	Parameter lastExecution should be final.	138
	'lastExecution' hides a field.	138
	Method 'getCreatedAt' is not designed for extension - needs to be abstract, final or empty.	142
	Missing a Javadoc comment.	142
	Method 'setCreatedAt' is not designed for extension - needs to be abstract, final or empty.	146
	Missing a Javadoc comment.	146
	Parameter createdAt should be final.	146
	'createdAt' hides a field.	146
	Method 'isDeleted' is not designed for extension - needs to be abstract, final or empty.	150
	Missing a Javadoc comment.	150
	Method 'setDeleted' is not designed for extension - needs to be abstract, final or empty.	154
	Missing a Javadoc comment.	154
	Parameter deleted should be final.	154
	'deleted' hides a field.	154
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	158
	Line is longer than 80 characters (found 119).	160

org/galaxy/services/beans/DataSourceStatePair.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	11
	Missing a Javadoc comment.	12
	Missing a Javadoc comment.	13
	Missing a Javadoc comment.	15
	Line is longer than 80 characters (found 81).	18
	Missing a Javadoc comment.	18
	Parameter sourceId should be final.	18
	'sourceId' hides a field.	18
	Parameter lastCancelationForDatasource should be final.	18
	Method 'getSourceId' is not designed for extension - needs to be abstract, final or empty.	23
	Missing a Javadoc comment.	23
	Method 'setSourceId' is not designed for extension - needs to be abstract, final or empty.	27
	Missing a Javadoc comment.	27
	Parameter sourceId should be final.	27
	'sourceId' hides a field.	27
	Method 'getCancelAtStamp' is not designed for extension - needs to be abstract, final or empty.	31
	Missing a Javadoc comment.	31
	Method 'setCancelAtStamp' is not designed for extension - needs to be abstract, final or empty.	35
	Missing a Javadoc comment.	35
	Parameter cancelAtStamp should be final.	35
	'cancelAtStamp' hides a field.	35
	Line has trailing spaces.	38

org/galaxy/services/beans/DataSourceStatePairs.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	17
	Missing a Javadoc comment.	18
	';' is preceded with whitespace.	20
	First sentence should end with a period.	21
	Line has trailing spaces.	23
	Missing a Javadoc comment.	30
	Parameter datasources should be final.	30
	Missing a Javadoc comment.	34
	Parameter datasources should be final.	34
	Method 'getDatasourcesStates' is not designed for extension - needs to be abstract, final or empty.	38
	Missing a Javadoc comment.	38
	'=' is not preceded with whitespace.	38
	'=' is not followed by whitespace.	38
	'=' is not preceded with whitespace.	39
	'=' is not followed by whitespace.	39
	Line is longer than 80 characters (found 83).	44
	Method 'setDatasourcesStates' is not designed for extension - needs to be abstract, final or empty.	44
	Missing a Javadoc comment.	44
	Parameter datasourcesStates should be final.	44
	'datasourcesStates' hides a field.	44
	Line has trailing spaces.	47
	Method 'addPair' is not designed for extension - needs to be abstract, final or empty.	48
	Missing a Javadoc comment.	48
	'(' is followed by whitespace.	48
	Parameter pair should be final.	48
	')' is preceded with whitespace.	48
	'{' is not preceded with whitespace.	48
	Line has trailing spaces.	51

org/galaxy/services/beans/DataSourceTaskReport.java

Violation	Message	Line
	File does not end with a newline.	0
	Line is longer than 80 characters (found 147).	14
	'}' is not preceded with whitespace.	14
	Missing a Javadoc comment.	18
	Line has trailing spaces.	89
	Parameter sourceId should be final.	118
	'sourceId' hides a field.	118
	Expected @param tag for 'sourceId'.	118
	Parameter id should be final.	127
	'id' hides a field.	127
	Expected @param tag for 'id'.	127
	Parameter sourceId should be final.	127
	'sourceId' hides a field.	127
	Expected @param tag for 'sourceId'.	127
	Should use uppercase 'L'.	131
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	134
	Missing a Javadoc comment.	134
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	138
	Missing a Javadoc comment.	138
	Parameter id should be final.	138
	'id' hides a field.	138
	Method 'getSourceId' is not designed for extension - needs to be abstract, final or empty.	142
	Missing a Javadoc comment.	142
	Method 'setSourceId' is not designed for extension - needs to be abstract, final or empty.	146
	Missing a Javadoc comment.	146
	Parameter sourceId should be final.	146
	'sourceId' hides a field.	146
	Method 'getStarted' is not designed for extension - needs to be abstract, final or empty.	150
	Missing a Javadoc comment.	150
	Method 'setStarted' is not designed for extension - needs to be abstract, final or empty.	154
	Missing a Javadoc comment.	154
	Parameter started should be final.	154
	'started' hides a field.	154
	Method 'getStopped' is not designed for extension - needs to be abstract, final or empty.	158
	Missing a Javadoc comment.	158
	Method 'setStopped' is not designed for extension - needs to be abstract, final or empty.	162
	Missing a Javadoc comment.	162
	Parameter stopped should be final.	162
	'stopped' hides a field.	162
	Method 'getState' is not designed for extension - needs to be abstract, final or empty.	166
	Missing a Javadoc comment.	166
	Method 'setState' is not designed for extension - needs to be abstract, final or empty.	170
	Missing a Javadoc comment.	170
	Parameter state should be final.	170
	'state' hides a field.	170
	Method 'getRead' is not designed for extension - needs to be abstract, final or empty.	174
	Missing a Javadoc comment.	174
	Method 'setRead' is not designed for extension - needs to be abstract, final or empty.	178
	Missing a Javadoc comment.	178
	Parameter read should be final.	178
	'read' hides a field.	178
	Method 'getAdded' is not designed for extension - needs to be abstract, final or empty.	182
	Missing a Javadoc comment.	182
	Method 'setAdded' is not designed for extension - needs to be abstract, final or empty.	186
	Missing a Javadoc comment.	186
	Parameter added should be final.	186
	'added' hides a field.	186
	Method 'getModified' is not designed for extension - needs to be abstract, final or empty.	190
	Missing a Javadoc comment.	190
	Method 'setModified' is not designed for extension - needs to be abstract, final or empty.	194
	Missing a Javadoc comment.	194
	Parameter modified should be final.	194
	'modified' hides a field.	194
	Method 'getUnmodified' is not designed for extension - needs to be abstract, final or empty.	198
	Missing a Javadoc comment.	198
	Method 'setUnmodified' is not designed for extension - needs to be abstract, final or empty.	202
	Missing a Javadoc comment.	202
	Parameter unmodified should be final.	202
	'unmodified' hides a field.	202
	Method 'getFiltered' is not designed for extension - needs to be abstract, final or empty.	206
	Missing a Javadoc comment.	206
	Method 'setFiltered' is not designed for extension - needs to be abstract, final or empty.	210
	Missing a Javadoc comment.	210
	Parameter filtered should be final.	210
	'filtered' hides a field.	210
	Method 'getTaskId' is not designed for extension - needs to be abstract, final or empty.	214
	Missing a Javadoc comment.	214
	Method 'setTaskId' is not designed for extension - needs to be abstract, final or empty.	218
	Missing a Javadoc comment.	218
	Parameter taskId should be final.	218
	'taskId' hides a field.	218
	Method 'getFetched' is not designed for extension - needs to be abstract, final or empty.	222
	Missing a Javadoc comment.	222
	Method 'setFetched' is not designed for extension - needs to be abstract, final or empty.	226
	Missing a Javadoc comment.	226
	Parameter fetched should be final.	226
	'fetched' hides a field.	226

org/galaxy/services/beans/DirectoryFiles.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Line has trailing spaces.	14
	'}' is not preceded with whitespace.	19
	Line has trailing spaces.	21
	Missing a Javadoc comment.	23
	Line has trailing spaces.	24
	Missing a Javadoc comment.	25
	Line has trailing spaces.	30
	Line has trailing spaces.	37
	Method 'getPaths' is not designed for extension - needs to be abstract, final or empty.	37
	Missing a Javadoc comment.	37
	'=' is not preceded with whitespace.	38
	'=' is not followed by whitespace.	38
	'=' is not preceded with whitespace.	38
	'=' is not followed by whitespace.	38
	Line has trailing spaces.	39
	Method 'setPaths' is not designed for extension - needs to be abstract, final or empty.	44
	Missing a Javadoc comment.	44
	Parameter paths should be final.	44
	'paths' hides a field.	44
	Line has trailing spaces.	47

org/galaxy/services/beans/DiskUsage.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Line has trailing spaces.	8
	Missing a Javadoc comment.	16
	Line has trailing spaces.	17
	Missing a Javadoc comment.	19
	Should use uppercase 'L'.	19
	Line has trailing spaces.	20
	Missing a Javadoc comment.	22
	Should use uppercase 'L'.	22
	Line has trailing spaces.	26
	Line has trailing spaces.	33
	Missing a Javadoc comment.	34
	Parameter usedSpace should be final.	34
	'usedSpace' hides a field.	34
	Parameter freeSpace should be final.	34
	'freeSpace' hides a field.	34
	Method 'getUsedSpace' is not designed for extension - needs to be abstract, final or empty.	39
	Missing a Javadoc comment.	39
	Method 'setUsedSpace' is not designed for extension - needs to be abstract, final or empty.	43
	Missing a Javadoc comment.	43
	Parameter usedSpace should be final.	43
	'usedSpace' hides a field.	43
	Method 'getFreeSpace' is not designed for extension - needs to be abstract, final or empty.	47
	Missing a Javadoc comment.	47
	Method 'setFreeSpace' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Parameter freeSpace should be final.	51
	'freeSpace' hides a field.	51
	Line has trailing spaces.	54
	Method 'getUsedSpaceInPercents' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	'cast' is not followed by whitespace.	56
	'*' is not preceded with whitespace.	56
	'*' is not followed by whitespace.	56
	'100' is a magic number.	56
	Line has trailing spaces.	58

org/galaxy/services/beans/GraphEdge.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	20
	Line has trailing spaces.	27
	Line has trailing spaces.	34
	Method 'getFrom' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Method 'setFrom' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Parameter from should be final.	55
	'from' hides a field.	55
	Method 'getTo' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	Method 'setTo' is not designed for extension - needs to be abstract, final or empty.	63
	Missing a Javadoc comment.	63
	Parameter to should be final.	63
	'to' hides a field.	63
	Method 'getReference' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Method 'setReference' is not designed for extension - needs to be abstract, final or empty.	71
	Missing a Javadoc comment.	71
	Parameter reference should be final.	71
	'reference' hides a field.	71

org/galaxy/services/beans/Group.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	7
	Line has trailing spaces.	16
	Line has trailing spaces.	20
	Line has trailing spaces.	23
	Line has trailing spaces.	32
	Line has trailing spaces.	34
	Parameter id should be final.	37
	Line has trailing spaces.	40

org/galaxy/services/beans/IndexSettings.java

Violation	Message	Line
	Line has trailing spaces.	14
	Missing a Javadoc comment.	20
	Line has trailing spaces.	21
	Missing a Javadoc comment.	23
	Line has trailing spaces.	24
	Missing a Javadoc comment.	26
	Missing a Javadoc comment.	29
	Line has trailing spaces.	30
	Missing a Javadoc comment.	32
	Line has trailing spaces.	33
	Missing a Javadoc comment.	35
	Line has trailing spaces.	36
	Missing a Javadoc comment.	38
	Line has trailing spaces.	39
	Missing a Javadoc comment.	41
	Line has trailing spaces.	42
	Missing a Javadoc comment.	44
	Line has trailing spaces.	45
	Missing a Javadoc comment.	47
	Line has trailing spaces.	48
	Missing a Javadoc comment.	50
	Line has trailing spaces.	51
	Missing a Javadoc comment.	53
	Line has trailing spaces.	54
	Line has trailing spaces.	56
	Missing a Javadoc comment.	56
	Line has trailing spaces.	59
	Method 'getCollection' is not designed for extension - needs to be abstract, final or empty.	66
	Missing a Javadoc comment.	66
	Method 'setCollection' is not designed for extension - needs to be abstract, final or empty.	70
	Missing a Javadoc comment.	70
	Parameter collection should be final.	70
	'collection' hides a field.	70
	Method 'getOwner' is not designed for extension - needs to be abstract, final or empty.	74
	Missing a Javadoc comment.	74
	Method 'setOwner' is not designed for extension - needs to be abstract, final or empty.	78
	Missing a Javadoc comment.	78
	Parameter owner should be final.	78
	'owner' hides a field.	78
	Method 'isMultiThreadExecution' is not designed for extension - needs to be abstract, final or empty.	82
	Missing a Javadoc comment.	82
	Method 'setMultiThreadExecution' is not designed for extension - needs to be abstract, final or empty.	86
	Missing a Javadoc comment.	86
	Parameter multiThreadExecution should be final.	86
	'multiThreadExecution' hides a field.	86
	Method 'getCapacity' is not designed for extension - needs to be abstract, final or empty.	90
	Missing a Javadoc comment.	90
	Method 'setCapacity' is not designed for extension - needs to be abstract, final or empty.	94
	Missing a Javadoc comment.	94
	Parameter capacity should be final.	94
	'capacity' hides a field.	94
	Method 'getMergeFactor' is not designed for extension - needs to be abstract, final or empty.	98
	Missing a Javadoc comment.	98
	Method 'setMergeFactor' is not designed for extension - needs to be abstract, final or empty.	102
	Missing a Javadoc comment.	102
	Parameter mergeFactor should be final.	102
	'mergeFactor' hides a field.	102
	Method 'getIndexConstPeriodOfTime' is not designed for extension - needs to be abstract, final or empty.	106
	Missing a Javadoc comment.	106
	Method 'setIndexConstPeriodOfTime' is not designed for extension - needs to be abstract, final or empty.	110
	Missing a Javadoc comment.	110
	Parameter indexConstPeriodOfTime should be final.	110
	'indexConstPeriodOfTime' hides a field.	110
	Method 'getCacheSize' is not designed for extension - needs to be abstract, final or empty.	114
	Missing a Javadoc comment.	114
	Method 'setCacheSize' is not designed for extension - needs to be abstract, final or empty.	118
	Missing a Javadoc comment.	118
	Parameter cacheSize should be final.	118
	'cacheSize' hides a field.	118
	Method 'getEvaluationModel' is not designed for extension - needs to be abstract, final or empty.	122
	Missing a Javadoc comment.	122
	Method 'setEvaluationModel' is not designed for extension - needs to be abstract, final or empty.	126
	Missing a Javadoc comment.	126
	Parameter evaluationModel should be final.	126
	'evaluationModel' hides a field.	126
	Method 'getMaxHitsToScan' is not designed for extension - needs to be abstract, final or empty.	130
	Missing a Javadoc comment.	130
	Method 'setMaxHitsToScan' is not designed for extension - needs to be abstract, final or empty.	134
	Missing a Javadoc comment.	134
	Parameter maxHitsToScan should be final.	134
	'maxHitsToScan' hides a field.	134
	Method 'getPageRankBooster' is not designed for extension - needs to be abstract, final or empty.	138
	Missing a Javadoc comment.	138
	Method 'setPageRankBooster' is not designed for extension - needs to be abstract, final or empty.	142
	Missing a Javadoc comment.	142
	Parameter pageRankBooster should be final.	142
	'pageRankBooster' hides a field.	142
	Method 'getFilters' is not designed for extension - needs to be abstract, final or empty.	146
	Missing a Javadoc comment.	146
	Method 'setFilters' is not designed for extension - needs to be abstract, final or empty.	150
	Missing a Javadoc comment.	150
	Parameter filters should be final.	150
	'filters' hides a field.	150
	Method 'getRequireRoles' is not designed for extension - needs to be abstract, final or empty.	154
	Missing a Javadoc comment.	154
	Method 'setRequireRoles' is not designed for extension - needs to be abstract, final or empty.	158
	Missing a Javadoc comment.	158
	Parameter requireRoles should be final.	158
	'requireRoles' hides a field.	158
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	162
	Line is longer than 80 characters (found 462).	164
	Line has trailing spaces.	166

org/galaxy/services/beans/LocalPathDetail.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Missing a Javadoc comment.	17
	Line has trailing spaces.	18
	Missing a Javadoc comment.	20
	Line has trailing spaces.	21
	Missing a Javadoc comment.	23
	Missing a Javadoc comment.	25
	Line has trailing spaces.	28
	Missing a Javadoc comment.	29
	Parameter path should be final.	29
	'path' hides a field.	29
	Parameter directory should be final.	29
	'directory' hides a field.	29
	Method 'getPath' is not designed for extension - needs to be abstract, final or empty.	34
	Missing a Javadoc comment.	34
	Method 'setPath' is not designed for extension - needs to be abstract, final or empty.	38
	Missing a Javadoc comment.	38
	Parameter path should be final.	38
	'path' hides a field.	38
	Method 'isDirectory' is not designed for extension - needs to be abstract, final or empty.	42
	Missing a Javadoc comment.	42
	Method 'setDirectory' is not designed for extension - needs to be abstract, final or empty.	46
	Missing a Javadoc comment.	46
	Parameter directory should be final.	46
	'directory' hides a field.	46
	Line has trailing spaces.	49
	Method 'getName' is not designed for extension - needs to be abstract, final or empty.	50
	Missing a Javadoc comment.	50
	Method 'getExtension' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Avoid inline conditionals.	58
	'+' is not preceded with whitespace.	58
	'+' is not followed by whitespace.	58
	Line has trailing spaces.	60

org/galaxy/services/beans/Message.java

Violation	Message	Line
	Missing a Javadoc comment.	14
	Line has trailing spaces.	15
	Missing a Javadoc comment.	16
	Missing a Javadoc comment.	18
	Missing a Javadoc comment.	22
	Parameter message should be final.	22
	'message' hides a field.	22
	Method 'getMessage' is not designed for extension - needs to be abstract, final or empty.	26
	Missing a Javadoc comment.	26
	Method 'setMessage' is not designed for extension - needs to be abstract, final or empty.	30
	Missing a Javadoc comment.	30
	Parameter message should be final.	30
	'message' hides a field.	30
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	34
	Line has trailing spaces.	38

org/galaxy/services/beans/PaginableSet.java

Violation	Message	Line
	Type Javadoc comment is missing an @param <T> tag.	19
	Line is longer than 80 characters (found 213).	21
	'}' is not preceded with whitespace.	21
	Missing a Javadoc comment.	25
	Missing a Javadoc comment.	28
	Missing a Javadoc comment.	31
	Missing a Javadoc comment.	34
	Missing a Javadoc comment.	37
	Missing a Javadoc comment.	39
	'10' is a magic number.	48
	Unused @param tag for 'results'.	54
	Parameter offset should be final.	60
	'offset' hides a field.	60
	Parameter limit should be final.	60
	'limit' hides a field.	60
	Parameter total should be final.	60
	'total' hides a field.	60
	Parameter displayable should be final.	60
	'displayable' hides a field.	60
	Expected @param tag for 'displayable'.	60
	Line is longer than 80 characters (found 93).	64
	Missing a Javadoc comment.	64
	Parameter offset should be final.	64
	'offset' hides a field.	64
	Parameter limit should be final.	64
	'limit' hides a field.	64
	Parameter total should be final.	64
	'total' hides a field.	64
	Parameter displayable should be final.	64
	'displayable' hides a field.	64
	Parameter entries should be final.	64
	'entries' hides a field.	64
	Method 'getOffset' is not designed for extension - needs to be abstract, final or empty.	72
	Missing a Javadoc comment.	72
	Method 'setOffset' is not designed for extension - needs to be abstract, final or empty.	76
	Missing a Javadoc comment.	76
	Parameter offset should be final.	76
	'offset' hides a field.	76
	Method 'getLimit' is not designed for extension - needs to be abstract, final or empty.	80
	Missing a Javadoc comment.	80
	Method 'setLimit' is not designed for extension - needs to be abstract, final or empty.	84
	Missing a Javadoc comment.	84
	Parameter limit should be final.	84
	'limit' hides a field.	84
	Method 'getTotal' is not designed for extension - needs to be abstract, final or empty.	88
	Missing a Javadoc comment.	88
	Method 'setTotal' is not designed for extension - needs to be abstract, final or empty.	92
	Missing a Javadoc comment.	92
	Parameter total should be final.	92
	'total' hides a field.	92
	Method 'getDisplayable' is not designed for extension - needs to be abstract, final or empty.	96
	Missing a Javadoc comment.	96
	Method 'setDisplayable' is not designed for extension - needs to be abstract, final or empty.	100
	Missing a Javadoc comment.	100
	Parameter displayable should be final.	100
	'displayable' hides a field.	100
	Method 'getEntries' is not designed for extension - needs to be abstract, final or empty.	104
	Missing a Javadoc comment.	104
	Line is longer than 80 characters (found 84).	105
	'=' is not preceded with whitespace.	105
	'=' is not followed by whitespace.	105
	'=' is not preceded with whitespace.	105
	'=' is not followed by whitespace.	105
	Line is longer than 80 characters (found 84).	106
	'=' is not preceded with whitespace.	106
	'=' is not followed by whitespace.	106
	'=' is not preceded with whitespace.	106
	'=' is not followed by whitespace.	106
	Line is longer than 80 characters (found 82).	107
	'=' is not preceded with whitespace.	107
	'=' is not followed by whitespace.	107
	'=' is not preceded with whitespace.	107
	'=' is not followed by whitespace.	107
	Line is longer than 80 characters (found 90).	108
	'=' is not preceded with whitespace.	108
	'=' is not followed by whitespace.	108
	'=' is not preceded with whitespace.	108
	'=' is not followed by whitespace.	108
	Line is longer than 80 characters (found 90).	109
	'=' is not preceded with whitespace.	109
	'=' is not followed by whitespace.	109
	'=' is not preceded with whitespace.	109
	'=' is not followed by whitespace.	109
	'=' is not preceded with whitespace.	110
	'=' is not followed by whitespace.	110
	'=' is not preceded with whitespace.	110
	'=' is not followed by whitespace.	110
	'=' is not preceded with whitespace.	111
	'=' is not followed by whitespace.	111
	'=' is not preceded with whitespace.	111
	'=' is not followed by whitespace.	111
	Line is longer than 80 characters (found 86).	112
	'=' is not preceded with whitespace.	112
	'=' is not followed by whitespace.	112
	'=' is not preceded with whitespace.	112
	'=' is not followed by whitespace.	112
	Line is longer than 80 characters (found 84).	113
	'=' is not preceded with whitespace.	113
	'=' is not followed by whitespace.	113
	'=' is not preceded with whitespace.	113
	'=' is not followed by whitespace.	113
	Line is longer than 80 characters (found 83).	114
	'=' is not preceded with whitespace.	114
	'=' is not followed by whitespace.	114
	'=' is not preceded with whitespace.	114
	'=' is not followed by whitespace.	114
	Line is longer than 80 characters (found 89).	115
	'=' is not preceded with whitespace.	115
	'=' is not followed by whitespace.	115
	'=' is not preceded with whitespace.	115
	'=' is not followed by whitespace.	115
	Line is longer than 80 characters (found 95).	116
	'=' is not preceded with whitespace.	116
	'=' is not followed by whitespace.	116
	'=' is not preceded with whitespace.	116
	'=' is not followed by whitespace.	116
	'=' is not preceded with whitespace.	118
	'=' is not followed by whitespace.	118
	Method 'setEntries' is not designed for extension - needs to be abstract, final or empty.	123
	Missing a Javadoc comment.	123
	Parameter entries should be final.	123
	'entries' hides a field.	123

org/galaxy/services/beans/Preference.java

Violation	Message	Line
	'=' is not preceded with whitespace.	12
	'=' is not followed by whitespace.	12
	'}' is not preceded with whitespace.	12
	Missing a Javadoc comment.	16
	Line has trailing spaces.	17
	Missing a Javadoc comment.	19
	Line has trailing spaces.	20
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	25
	Line has trailing spaces.	29
	Missing a Javadoc comment.	36
	Parameter context should be final.	36
	'context' hides a field.	36
	Parameter key should be final.	36
	'key' hides a field.	36
	Parameter value should be final.	36
	'value' hides a field.	36
	Line has trailing spaces.	41
	Line has trailing spaces.	44
	Expected an @return tag.	47
	Method 'getContext' is not designed for extension - needs to be abstract, final or empty.	47
	Line has trailing spaces.	53
	Method 'setContext' is not designed for extension - needs to be abstract, final or empty.	57
	Parameter context should be final.	57
	'context' hides a field.	57
	Line has trailing spaces.	60
	Line has trailing spaces.	63
	Expected an @return tag.	66
	Method 'getKey' is not designed for extension - needs to be abstract, final or empty.	66
	Line has trailing spaces.	72
	Method 'setKey' is not designed for extension - needs to be abstract, final or empty.	76
	Parameter key should be final.	76
	'key' hides a field.	76
	Line has trailing spaces.	82
	Expected an @return tag.	85
	Method 'getValue' is not designed for extension - needs to be abstract, final or empty.	85
	Line has trailing spaces.	91
	Method 'setValue' is not designed for extension - needs to be abstract, final or empty.	95
	Parameter value should be final.	95
	'value' hides a field.	95

org/galaxy/services/beans/Preferences.java

Violation	Message	Line
	Line has trailing spaces.	9
	Missing a Javadoc comment.	17
	Line has trailing spaces.	18
	Missing a Javadoc comment.	20
	Line has trailing spaces.	21
	Line has trailing spaces.	24
	First sentence should end with a period.	31
	Line has trailing spaces.	33
	Parameter preferences should be final.	37
	'preferences' hides a field.	37
	Line has trailing spaces.	43
	Line has trailing spaces.	47
	Method 'getPreferences' is not designed for extension - needs to be abstract, final or empty.	47
	'=' is not preceded with whitespace.	48
	'=' is not followed by whitespace.	48
	'=' is not preceded with whitespace.	48
	'=' is not followed by whitespace.	48
	Line has trailing spaces.	49
	Line has trailing spaces.	56
	Method 'setPreferences' is not designed for extension - needs to be abstract, final or empty.	60
	Parameter preferences should be final.	60
	'preferences' hides a field.	60
	Line has trailing spaces.	63

org/galaxy/services/beans/RegisteredSystem.java

Violation	Message	Line
	Line has trailing spaces.	15
	Line has trailing spaces.	19
	Line has trailing spaces.	22
	Line has trailing spaces.	26
	Line has trailing spaces.	29
	Line has trailing spaces.	33
	Line has trailing spaces.	36
	Line has trailing spaces.	40
	Line has trailing spaces.	43
	Line has trailing spaces.	47
	Missing a Javadoc comment.	48
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Parameter id should be final.	55
	'id' hides a field.	55
	Method 'getName' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	Method 'setName' is not designed for extension - needs to be abstract, final or empty.	63
	Missing a Javadoc comment.	63
	Parameter name should be final.	63
	'name' hides a field.	63
	Method 'isAvailable' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Method 'setAvailable' is not designed for extension - needs to be abstract, final or empty.	71
	Missing a Javadoc comment.	71
	Parameter available should be final.	71
	'available' hides a field.	71
	Method 'getDomain' is not designed for extension - needs to be abstract, final or empty.	75
	Missing a Javadoc comment.	75
	Method 'setDomain' is not designed for extension - needs to be abstract, final or empty.	79
	Missing a Javadoc comment.	79
	Parameter domain should be final.	79
	'domain' hides a field.	79
	Line has trailing spaces.	82

org/galaxy/services/beans/RegisteredSystems.java

Violation	Message	Line
	Missing a Javadoc comment.	20
	Line has trailing spaces.	21
	Missing a Javadoc comment.	22
	First sentence should end with a period.	25
	Line has trailing spaces.	27
	Missing a Javadoc comment.	34
	Parameter systems should be final.	34
	'systems' hides a field.	34
	Missing a Javadoc comment.	38
	Parameter systems should be final.	38
	'systems' hides a field.	38
	Method 'getSystems' is not designed for extension - needs to be abstract, final or empty.	42
	Missing a Javadoc comment.	42
	'=' is not preceded with whitespace.	42
	'=' is not followed by whitespace.	42
	'=' is not preceded with whitespace.	43
	'=' is not followed by whitespace.	43
	Method 'setSystems' is not designed for extension - needs to be abstract, final or empty.	48
	Missing a Javadoc comment.	48
	Parameter systems should be final.	48
	'systems' hides a field.	48
	Line has trailing spaces.	51

org/galaxy/services/beans/Resource.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	11
	Missing a Javadoc comment.	19
	Line has trailing spaces.	20
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	25
	Missing a Javadoc comment.	28
	Missing a Javadoc comment.	31
	Missing a Javadoc comment.	34
	Missing a Javadoc comment.	37
	Line has trailing spaces.	38
	Missing a Javadoc comment.	40
	Line has trailing spaces.	41
	Missing a Javadoc comment.	43
	Line has trailing spaces.	44
	Missing a Javadoc comment.	46
	Line has trailing spaces.	47
	Line is longer than 80 characters (found 104).	48
	Missing a Javadoc comment.	49
	Missing a Javadoc comment.	52
	Line has trailing spaces.	53
	Missing a Javadoc comment.	55
	Line has trailing spaces.	56
	Missing a Javadoc comment.	58
	Missing a Javadoc comment.	60
	Should use uppercase 'L'.	61
	Line has trailing spaces.	63
	Missing a Javadoc comment.	64
	Parameter id should be final.	64
	'id' hides a field.	64
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	69
	Missing a Javadoc comment.	69
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	73
	Missing a Javadoc comment.	73
	Parameter id should be final.	73
	'id' hides a field.	73
	Method 'getUuid' is not designed for extension - needs to be abstract, final or empty.	77
	Missing a Javadoc comment.	77
	Method 'setUuid' is not designed for extension - needs to be abstract, final or empty.	81
	Missing a Javadoc comment.	81
	Parameter uuid should be final.	81
	'uuid' hides a field.	81
	Method 'getRevision' is not designed for extension - needs to be abstract, final or empty.	85
	Missing a Javadoc comment.	85
	Method 'setRevision' is not designed for extension - needs to be abstract, final or empty.	89
	Missing a Javadoc comment.	89
	Parameter revision should be final.	89
	'revision' hides a field.	89
	Method 'getCollection' is not designed for extension - needs to be abstract, final or empty.	93
	Missing a Javadoc comment.	93
	Method 'setCollection' is not designed for extension - needs to be abstract, final or empty.	97
	Missing a Javadoc comment.	97
	Parameter collection should be final.	97
	'collection' hides a field.	97
	Method 'getDataSource' is not designed for extension - needs to be abstract, final or empty.	101
	Missing a Javadoc comment.	101
	Method 'setDataSource' is not designed for extension - needs to be abstract, final or empty.	105
	Missing a Javadoc comment.	105
	Parameter dataSource should be final.	105
	'dataSource' hides a field.	105
	Method 'getReference' is not designed for extension - needs to be abstract, final or empty.	109
	Missing a Javadoc comment.	109
	Method 'setReference' is not designed for extension - needs to be abstract, final or empty.	114
	Missing a Javadoc comment.	114
	Parameter reference should be final.	114
	'reference' hides a field.	114
	Method 'getTitle' is not designed for extension - needs to be abstract, final or empty.	118
	Missing a Javadoc comment.	118
	Method 'setTitle' is not designed for extension - needs to be abstract, final or empty.	123
	Missing a Javadoc comment.	123
	Parameter title should be final.	123
	'title' hides a field.	123
	Method 'getMime' is not designed for extension - needs to be abstract, final or empty.	127
	Missing a Javadoc comment.	127
	Method 'setMime' is not designed for extension - needs to be abstract, final or empty.	131
	Missing a Javadoc comment.	131
	Parameter mime should be final.	131
	'mime' hides a field.	131
	Method 'getChecksum' is not designed for extension - needs to be abstract, final or empty.	135
	Missing a Javadoc comment.	135
	Method 'setChecksum' is not designed for extension - needs to be abstract, final or empty.	139
	Missing a Javadoc comment.	139
	Parameter checksum should be final.	139
	'checksum' hides a field.	139
	Method 'getTimestamp' is not designed for extension - needs to be abstract, final or empty.	143
	Missing a Javadoc comment.	143
	Method 'setTimestamp' is not designed for extension - needs to be abstract, final or empty.	147
	Missing a Javadoc comment.	147
	Parameter timestamp should be final.	147
	'timestamp' hides a field.	147
	Method 'getData' is not designed for extension - needs to be abstract, final or empty.	151
	Missing a Javadoc comment.	151
	Method 'setData' is not designed for extension - needs to be abstract, final or empty.	155
	Missing a Javadoc comment.	155
	Parameter data should be final.	155
	'data' hides a field.	155
	Method 'getText' is not designed for extension - needs to be abstract, final or empty.	159
	Missing a Javadoc comment.	159
	Method 'setText' is not designed for extension - needs to be abstract, final or empty.	164
	Missing a Javadoc comment.	164
	Parameter text should be final.	164
	'text' hides a field.	164
	Method 'getMeta' is not designed for extension - needs to be abstract, final or empty.	168
	Missing a Javadoc comment.	168
	Method 'setMeta' is not designed for extension - needs to be abstract, final or empty.	172
	Missing a Javadoc comment.	172
	Parameter meta should be final.	172
	'meta' hides a field.	172
	Line has trailing spaces.	175
	Method 'isEmpty' is not designed for extension - needs to be abstract, final or empty.	176
	Missing a Javadoc comment.	176
	'{' is not preceded with whitespace.	177
	Line is longer than 80 characters (found 98).	178
	Line has trailing spaces.	180
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	181
	Line is longer than 80 characters (found 127).	183

org/galaxy/services/beans/Schema.java

Violation	Message	Line
	Line has trailing spaces.	5
	Line has trailing spaces.	13
	Line has trailing spaces.	17

org/galaxy/services/beans/SearchHit.java

Violation	Message	Line
	File does not end with a newline.	0
	'=' is not preceded with whitespace.	13
	'=' is not followed by whitespace.	13
	Missing a Javadoc comment.	17
	Missing a Javadoc comment.	97
	Method 'getContentType' is not designed for extension - needs to be abstract, final or empty.	100
	Missing a Javadoc comment.	100
	Method 'setContentType' is not designed for extension - needs to be abstract, final or empty.	104
	Missing a Javadoc comment.	104
	Parameter contentType should be final.	104
	'contentType' hides a field.	104
	Method 'getUid' is not designed for extension - needs to be abstract, final or empty.	108
	Missing a Javadoc comment.	108
	Method 'setUid' is not designed for extension - needs to be abstract, final or empty.	112
	Missing a Javadoc comment.	112
	Parameter uid should be final.	112
	'uid' hides a field.	112
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	116
	Missing a Javadoc comment.	116
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	120
	Missing a Javadoc comment.	120
	Parameter id should be final.	120
	'id' hides a field.	120
	Method 'getRevision' is not designed for extension - needs to be abstract, final or empty.	124
	Missing a Javadoc comment.	124
	Method 'setRevision' is not designed for extension - needs to be abstract, final or empty.	128
	Missing a Javadoc comment.	128
	Parameter revision should be final.	128
	'revision' hides a field.	128
	Line has trailing spaces.	132
	Method 'getTitle' is not designed for extension - needs to be abstract, final or empty.	133
	Missing a Javadoc comment.	133
	Method 'setTitle' is not designed for extension - needs to be abstract, final or empty.	138
	Missing a Javadoc comment.	138
	Parameter title should be final.	138
	'title' hides a field.	138
	Method 'getSnippet' is not designed for extension - needs to be abstract, final or empty.	142
	Missing a Javadoc comment.	142
	Method 'setSnippet' is not designed for extension - needs to be abstract, final or empty.	147
	Missing a Javadoc comment.	147
	Parameter snippet should be final.	147
	'snippet' hides a field.	147
	Method 'getReference' is not designed for extension - needs to be abstract, final or empty.	151
	Missing a Javadoc comment.	151
	Method 'setReference' is not designed for extension - needs to be abstract, final or empty.	155
	Missing a Javadoc comment.	155
	Parameter reference should be final.	155
	'reference' hides a field.	155
	Method 'getTimestamp' is not designed for extension - needs to be abstract, final or empty.	159
	Missing a Javadoc comment.	159
	Method 'setTimestamp' is not designed for extension - needs to be abstract, final or empty.	163
	Missing a Javadoc comment.	163
	Parameter timestamp should be final.	163
	'timestamp' hides a field.	163
	Method 'getSimilarity' is not designed for extension - needs to be abstract, final or empty.	167
	Missing a Javadoc comment.	167
	Method 'setSimilarity' is not designed for extension - needs to be abstract, final or empty.	171
	Missing a Javadoc comment.	171
	Parameter similarity should be final.	171
	'similarity' hides a field.	171
	Method 'getAttributes' is not designed for extension - needs to be abstract, final or empty.	175
	Missing a Javadoc comment.	175
	Method 'setAttributes' is not designed for extension - needs to be abstract, final or empty.	179
	Missing a Javadoc comment.	179
	Parameter attributes should be final.	179
	'attributes' hides a field.	179
	Method 'isStartGroup' is not designed for extension - needs to be abstract, final or empty.	183
	Missing a Javadoc comment.	183
	Method 'setStartGroup' is not designed for extension - needs to be abstract, final or empty.	187
	Missing a Javadoc comment.	187
	Parameter startGroup should be final.	187
	'startGroup' hides a field.	187

org/galaxy/services/beans/SearchQuery.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Missing a Javadoc comment.	16
	Missing a Javadoc comment.	18
	Missing a Javadoc comment.	21
	Missing a Javadoc comment.	24
	Missing a Javadoc comment.	27
	Missing a Javadoc comment.	30
	'10' is a magic number.	30
	Missing a Javadoc comment.	33
	Missing a Javadoc comment.	35
	Method 'getCollection' is not designed for extension - needs to be abstract, final or empty.	38
	Missing a Javadoc comment.	38
	Method 'setCollection' is not designed for extension - needs to be abstract, final or empty.	42
	Missing a Javadoc comment.	42
	Parameter collection should be final.	42
	'collection' hides a field.	42
	Method 'getText' is not designed for extension - needs to be abstract, final or empty.	46
	Missing a Javadoc comment.	46
	Method 'setText' is not designed for extension - needs to be abstract, final or empty.	50
	Missing a Javadoc comment.	50
	Parameter text should be final.	50
	'text' hides a field.	50
	Method 'getOffset' is not designed for extension - needs to be abstract, final or empty.	54
	Missing a Javadoc comment.	54
	Method 'setOffset' is not designed for extension - needs to be abstract, final or empty.	58
	Missing a Javadoc comment.	58
	Parameter offset should be final.	58
	'offset' hides a field.	58
	Method 'getLimit' is not designed for extension - needs to be abstract, final or empty.	62
	Missing a Javadoc comment.	62
	Method 'setLimit' is not designed for extension - needs to be abstract, final or empty.	66
	Missing a Javadoc comment.	66
	Parameter limit should be final.	66
	'limit' hides a field.	66
	Method 'getControls' is not designed for extension - needs to be abstract, final or empty.	70
	Missing a Javadoc comment.	70
	Method 'setControls' is not designed for extension - needs to be abstract, final or empty.	74
	Missing a Javadoc comment.	74
	Parameter controls should be final.	74
	'controls' hides a field.	74

org/galaxy/services/beans/SearchResult.java

Violation	Message	Line
	Line is longer than 80 characters (found 89).	15
	Missing a Javadoc comment.	20
	Missing a Javadoc comment.	22
	Missing a Javadoc comment.	24
	Missing a Javadoc comment.	26
	Missing a Javadoc comment.	28
	Line has trailing spaces.	29
	Missing a Javadoc comment.	30
	Missing a Javadoc comment.	32
	Missing a Javadoc comment.	34
	Missing a Javadoc comment.	36
	Method 'getOffset' is not designed for extension - needs to be abstract, final or empty.	40
	Missing a Javadoc comment.	40
	Method 'setOffset' is not designed for extension - needs to be abstract, final or empty.	44
	Missing a Javadoc comment.	44
	Parameter offset should be final.	44
	'offset' hides a field.	44
	Method 'getWouldBe' is not designed for extension - needs to be abstract, final or empty.	48
	Missing a Javadoc comment.	48
	Method 'setWouldBe' is not designed for extension - needs to be abstract, final or empty.	52
	Missing a Javadoc comment.	52
	Parameter wouldBe should be final.	52
	'wouldBe' hides a field.	52
	Method 'getScanned' is not designed for extension - needs to be abstract, final or empty.	56
	Missing a Javadoc comment.	56
	Method 'setScanned' is not designed for extension - needs to be abstract, final or empty.	60
	Missing a Javadoc comment.	60
	Parameter scanned should be final.	60
	'scanned' hides a field.	60
	Line has trailing spaces.	63
	Method 'getTotalCount' is not designed for extension - needs to be abstract, final or empty.	64
	Missing a Javadoc comment.	64
	Method 'setTotalCount' is not designed for extension - needs to be abstract, final or empty.	68
	Missing a Javadoc comment.	68
	Parameter totalCount should be final.	68
	'totalCount' hides a field.	68
	Line has trailing spaces.	71
	Method 'getExecutionTime' is not designed for extension - needs to be abstract, final or empty.	72
	Missing a Javadoc comment.	72
	Method 'setExecutionTime' is not designed for extension - needs to be abstract, final or empty.	76
	Missing a Javadoc comment.	76
	Parameter executionTime should be final.	76
	'executionTime' hides a field.	76
	Method 'getResultLength' is not designed for extension - needs to be abstract, final or empty.	80
	Missing a Javadoc comment.	80
	Method 'setResultLength' is not designed for extension - needs to be abstract, final or empty.	84
	Missing a Javadoc comment.	84
	Parameter resultLength should be final.	84
	'resultLength' hides a field.	84
	Method 'getHits' is not designed for extension - needs to be abstract, final or empty.	88
	Missing a Javadoc comment.	88
	Method 'setHits' is not designed for extension - needs to be abstract, final or empty.	92
	Missing a Javadoc comment.	92
	Parameter hits should be final.	92
	'hits' hides a field.	92

org/galaxy/services/beans/ServiceFailure.java

Violation	Message	Line
	'=' is not preceded with whitespace.	11
	'=' is not followed by whitespace.	11
	Missing a Javadoc comment.	15
	Line is longer than 80 characters (found 88).	17
	Missing a Javadoc comment.	18
	Missing a Javadoc comment.	21
	Missing a Javadoc comment.	24
	Missing a Javadoc comment.	35
	Parameter type should be final.	35
	'type' hides a field.	35
	Parameter code should be final.	35
	'code' hides a field.	35
	Parameter message should be final.	35
	'message' hides a field.	35
	Method 'getType' is not designed for extension - needs to be abstract, final or empty.	41
	Missing a Javadoc comment.	41
	Method 'setType' is not designed for extension - needs to be abstract, final or empty.	45
	Missing a Javadoc comment.	45
	Parameter type should be final.	45
	'type' hides a field.	45
	Method 'getCode' is not designed for extension - needs to be abstract, final or empty.	49
	Missing a Javadoc comment.	49
	Method 'setCode' is not designed for extension - needs to be abstract, final or empty.	53
	Missing a Javadoc comment.	53
	Parameter code should be final.	53
	'code' hides a field.	53
	Method 'getMessage' is not designed for extension - needs to be abstract, final or empty.	57
	Missing a Javadoc comment.	57
	Method 'setMessage' is not designed for extension - needs to be abstract, final or empty.	61
	Missing a Javadoc comment.	61
	Parameter message should be final.	61
	'message' hides a field.	61

org/galaxy/services/beans/ServiceFailureTypes.java

Violation	Message	Line
	Missing a Javadoc comment.	10
	Missing a Javadoc comment.	12

org/galaxy/services/beans/ServiceStatus.java

Violation	Message	Line
	Unused import - java.io.Serializable.	3
	Line has trailing spaces.	9
	'=' is not preceded with whitespace.	14
	'=' is not followed by whitespace.	14
	'}' is not preceded with whitespace.	14
	Missing a Javadoc comment.	18
	Line has trailing spaces.	19
	Line has trailing spaces.	22
	Line has trailing spaces.	26
	Line has trailing spaces.	29
	Line has trailing spaces.	33
	Line has trailing spaces.	35
	Missing a Javadoc comment.	37
	Line has trailing spaces.	42
	Line has trailing spaces.	51
	Parameter message should be final.	55
	'message' hides a field.	55
	Line has trailing spaces.	61
	Method 'getMessage' is not designed for extension - needs to be abstract, final or empty.	65
	Line has trailing spaces.	71
	Method 'setMessage' is not designed for extension - needs to be abstract, final or empty.	75
	Parameter message should be final.	75
	'message' hides a field.	75
	Method 'toString' is not designed for extension - needs to be abstract, final or empty.	79
	Line has trailing spaces.	83

org/galaxy/services/beans/Sharing.java

Violation	Message	Line
	File does not end with a newline.	0
	'}' is not preceded with whitespace.	13
	Missing a Javadoc comment.	47
	Missing a Javadoc comment.	51
	Parameter entityId should be final.	51
	'entityId' hides a field.	51
	Parameter collectionId should be final.	51
	'collectionId' hides a field.	51
	Parameter group should be final.	51
	'group' hides a field.	51
	Method 'getEntityId' is not designed for extension - needs to be abstract, final or empty.	57
	Missing a Javadoc comment.	57
	Method 'setEntityId' is not designed for extension - needs to be abstract, final or empty.	61
	Missing a Javadoc comment.	61
	Parameter entityId should be final.	61
	'entityId' hides a field.	61
	Method 'getCollectionId' is not designed for extension - needs to be abstract, final or empty.	65
	Missing a Javadoc comment.	65
	Method 'setCollectionId' is not designed for extension - needs to be abstract, final or empty.	69
	Missing a Javadoc comment.	69
	Parameter collectionId should be final.	69
	'collectionId' hides a field.	69
	Method 'isGroup' is not designed for extension - needs to be abstract, final or empty.	73
	Missing a Javadoc comment.	73
	Method 'setGroup' is not designed for extension - needs to be abstract, final or empty.	77
	Missing a Javadoc comment.	77
	Parameter group should be final.	77
	'group' hides a field.	77
	Method 'isWritable' is not designed for extension - needs to be abstract, final or empty.	81
	Missing a Javadoc comment.	81
	Method 'setWritable' is not designed for extension - needs to be abstract, final or empty.	85
	Missing a Javadoc comment.	85
	Parameter writable should be final.	85
	'writable' hides a field.	85
	Method 'hashCode' is not designed for extension - needs to be abstract, final or empty.	89
	'3' is a magic number.	91
	'71' is a magic number.	92
	'71' is a magic number.	93
	'71' is a magic number.	94
	Avoid inline conditionals.	94
	'71' is a magic number.	95
	Avoid inline conditionals.	95
	Method 'equals' is not designed for extension - needs to be abstract, final or empty.	99
	Parameter obj should be final.	100

org/galaxy/services/beans/Suggestion.java

Violation	Message	Line
	Missing a Javadoc comment.	13
	Line has trailing spaces.	14
	Missing a Javadoc comment.	16
	Line has trailing spaces.	19
	Missing a Javadoc comment.	19
	Missing a Javadoc comment.	22
	Line has trailing spaces.	25
	Line has trailing spaces.	27
	Line has trailing spaces.	29
	Unused @param tag for 'used'.	29
	Parameter text should be final.	32
	'text' hides a field.	32
	Expected @param tag for 'text'.	32
	Line has trailing spaces.	35
	Line has trailing spaces.	37
	Line has trailing spaces.	39
	Parameter text should be final.	42
	'text' hides a field.	42
	Expected @param tag for 'text'.	42
	Parameter used should be final.	42
	'used' hides a field.	42
	Line has trailing spaces.	48
	Line has trailing spaces.	49
	Expected an @return tag.	52
	Method 'getText' is not designed for extension - needs to be abstract, final or empty.	52
	Line has trailing spaces.	57
	Method 'setText' is not designed for extension - needs to be abstract, final or empty.	60
	Parameter text should be final.	60
	'text' hides a field.	60
	Expected @param tag for 'text'.	60
	Line has trailing spaces.	65
	Line has trailing spaces.	66
	Expected an @return tag.	69
	Method 'getUsed' is not designed for extension - needs to be abstract, final or empty.	69
	Line has trailing spaces.	74
	Method 'setUsed' is not designed for extension - needs to be abstract, final or empty.	78
	Parameter used should be final.	78
	'used' hides a field.	78
	Line has trailing spaces.	81

org/galaxy/services/beans/TaskBody.java

Violation	Message	Line
	Line has trailing spaces.	13
	Missing a Javadoc comment.	18
	Missing a Javadoc comment.	20
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	24
	Missing a Javadoc comment.	26
	Line has trailing spaces.	27
	Missing a Javadoc comment.	28
	Missing a Javadoc comment.	30
	Method 'getNick' is not designed for extension - needs to be abstract, final or empty.	34
	Missing a Javadoc comment.	34
	Method 'setNick' is not designed for extension - needs to be abstract, final or empty.	38
	Missing a Javadoc comment.	38
	Parameter nick should be final.	38
	'nick' hides a field.	38
	Method 'getAgent' is not designed for extension - needs to be abstract, final or empty.	42
	Missing a Javadoc comment.	42
	Method 'setAgent' is not designed for extension - needs to be abstract, final or empty.	46
	Missing a Javadoc comment.	46
	Parameter agent should be final.	46
	'agent' hides a field.	46
	Method 'getRepository' is not designed for extension - needs to be abstract, final or empty.	50
	Missing a Javadoc comment.	50
	Method 'setRepository' is not designed for extension - needs to be abstract, final or empty.	54
	Missing a Javadoc comment.	54
	Parameter repository should be final.	54
	'repository' hides a field.	54
	Method 'getValid' is not designed for extension - needs to be abstract, final or empty.	58
	Missing a Javadoc comment.	58
	Method 'setValid' is not designed for extension - needs to be abstract, final or empty.	62
	Missing a Javadoc comment.	62
	Parameter valid should be final.	62
	'valid' hides a field.	62
	Method 'getDomain' is not designed for extension - needs to be abstract, final or empty.	66
	Missing a Javadoc comment.	66
	Method 'setDomain' is not designed for extension - needs to be abstract, final or empty.	70
	Missing a Javadoc comment.	70
	Parameter domain should be final.	70
	'domain' hides a field.	70

org/galaxy/services/beans/TaskData.java

Violation	Message	Line
	File does not end with a newline.	0
	Missing a Javadoc comment.	6
	Missing a Javadoc comment.	13
	Missing a Javadoc comment.	15
	Line has trailing spaces.	16
	Missing a Javadoc comment.	17
	Line has trailing spaces.	18
	Missing a Javadoc comment.	19
	Line has trailing spaces.	20
	Missing a Javadoc comment.	21
	Method 'getHeader' is not designed for extension - needs to be abstract, final or empty.	25
	Missing a Javadoc comment.	25
	Method 'setHeader' is not designed for extension - needs to be abstract, final or empty.	29
	Missing a Javadoc comment.	29
	Parameter header should be final.	29
	'header' hides a field.	29
	Method 'getBody' is not designed for extension - needs to be abstract, final or empty.	33
	Missing a Javadoc comment.	33
	Method 'setBody' is not designed for extension - needs to be abstract, final or empty.	37
	Missing a Javadoc comment.	37
	Parameter body should be final.	37
	'body' hides a field.	37
	Method 'getBodyAsString' is not designed for extension - needs to be abstract, final or empty.	41
	Missing a Javadoc comment.	41
	Method 'setBodyAsString' is not designed for extension - needs to be abstract, final or empty.	45
	Missing a Javadoc comment.	45
	Parameter bodyAsString should be final.	45
	'bodyAsString' hides a field.	45
	Line has trailing spaces.	48

org/galaxy/services/beans/TaskHeader.java

Violation	Message	Line
	Line has trailing spaces.	8
	Line has trailing spaces.	9
	Line is longer than 80 characters (found 94).	15
	Missing a Javadoc comment.	20
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	24
	Line has trailing spaces.	25
	Missing a Javadoc comment.	26
	Line has trailing spaces.	27
	Missing a Javadoc comment.	28
	Line has trailing spaces.	29
	Missing a Javadoc comment.	30
	Line has trailing spaces.	31
	Missing a Javadoc comment.	32
	Line has trailing spaces.	33
	Missing a Javadoc comment.	34
	Line has trailing spaces.	35
	Missing a Javadoc comment.	36
	Missing a Javadoc comment.	38
	Method 'getOwnerId' is not designed for extension - needs to be abstract, final or empty.	42
	Missing a Javadoc comment.	42
	Method 'setOwnerId' is not designed for extension - needs to be abstract, final or empty.	46
	Missing a Javadoc comment.	46
	Parameter ownerId should be final.	46
	'ownerId' hides a field.	46
	Method 'getKey' is not designed for extension - needs to be abstract, final or empty.	50
	Missing a Javadoc comment.	50
	Method 'setKey' is not designed for extension - needs to be abstract, final or empty.	54
	Missing a Javadoc comment.	54
	Parameter key should be final.	54
	'key' hides a field.	54
	Method 'getTargetId' is not designed for extension - needs to be abstract, final or empty.	58
	Missing a Javadoc comment.	58
	Method 'setTargetId' is not designed for extension - needs to be abstract, final or empty.	62
	Missing a Javadoc comment.	62
	Parameter targetId should be final.	62
	'targetId' hides a field.	62
	Method 'getStartAt' is not designed for extension - needs to be abstract, final or empty.	66
	Missing a Javadoc comment.	66
	Method 'setStartAt' is not designed for extension - needs to be abstract, final or empty.	70
	Missing a Javadoc comment.	70
	Parameter startAt should be final.	70
	'startAt' hides a field.	70
	Method 'getCancelAt' is not designed for extension - needs to be abstract, final or empty.	74
	Missing a Javadoc comment.	74
	Method 'setCancelAt' is not designed for extension - needs to be abstract, final or empty.	78
	Missing a Javadoc comment.	78
	Parameter cancelAt should be final.	78
	'cancelAt' hides a field.	78
	Method 'getDuplicateSince' is not designed for extension - needs to be abstract, final or empty.	82
	Missing a Javadoc comment.	82
	Method 'setDuplicateSince' is not designed for extension - needs to be abstract, final or empty.	86
	Missing a Javadoc comment.	86
	Parameter duplicateSince should be final.	86
	'duplicateSince' hides a field.	86
	Method 'getServiceTo' is not designed for extension - needs to be abstract, final or empty.	90
	Missing a Javadoc comment.	90
	Method 'setServiceTo' is not designed for extension - needs to be abstract, final or empty.	94
	Missing a Javadoc comment.	94
	Parameter serviceTo should be final.	94
	'serviceTo' hides a field.	94
	Method 'getSpec' is not designed for extension - needs to be abstract, final or empty.	98
	Missing a Javadoc comment.	98
	Method 'setSpec' is not designed for extension - needs to be abstract, final or empty.	102
	Missing a Javadoc comment.	102
	Parameter spec should be final.	102
	'spec' hides a field.	102
	Line has trailing spaces.	105

org/galaxy/services/beans/TaskKey.java

Violation	Message	Line
	'}' is not preceded with whitespace.	12
	Missing a Javadoc comment.	16
	Line has trailing spaces.	17
	Missing a Javadoc comment.	19
	Line has trailing spaces.	20
	Line is longer than 80 characters (found 81).	21
	Missing a Javadoc comment.	22
	Line has trailing spaces.	23
	Missing a Javadoc comment.	25
	Line has trailing spaces.	28
	Line has trailing spaces.	29
	Line has trailing spaces.	38
	Line has trailing spaces.	40
	Parameter systemId should be final.	42
	'systemId' hides a field.	42
	Expected @param tag for 'systemId'.	42
	Parameter parentId should be final.	42
	'parentId' hides a field.	42
	Line has trailing spaces.	46
	Missing a Javadoc comment.	47
	Parameter systemId should be final.	47
	'systemId' hides a field.	47
	Parameter parentId should be final.	47
	'parentId' hides a field.	47
	Parameter serialId should be final.	47
	'serialId' hides a field.	47
	Method 'getSystemId' is not designed for extension - needs to be abstract, final or empty.	53
	Missing a Javadoc comment.	53
	Method 'setSystemId' is not designed for extension - needs to be abstract, final or empty.	57
	Missing a Javadoc comment.	57
	Parameter systemId should be final.	57
	'systemId' hides a field.	57
	Method 'getParentId' is not designed for extension - needs to be abstract, final or empty.	61
	Missing a Javadoc comment.	61
	Method 'setParentId' is not designed for extension - needs to be abstract, final or empty.	65
	Missing a Javadoc comment.	65
	Parameter parentId should be final.	65
	'parentId' hides a field.	65
	Method 'getSerialId' is not designed for extension - needs to be abstract, final or empty.	69
	Missing a Javadoc comment.	69
	Method 'setSerialId' is not designed for extension - needs to be abstract, final or empty.	73
	Missing a Javadoc comment.	73
	Parameter serialId should be final.	73
	'serialId' hides a field.	73
	Line has trailing spaces.	76

org/galaxy/services/beans/Timeline.java

Violation	Message	Line
	File does not end with a newline.	0
	'}' is not preceded with whitespace.	17
	Missing a Javadoc comment.	21
	Missing a Javadoc comment.	24
	Missing a Javadoc comment.	27
	Missing a Javadoc comment.	30
	Method 'getUuid' is not designed for extension - needs to be abstract, final or empty.	43
	Missing a Javadoc comment.	43
	Method 'setUuid' is not designed for extension - needs to be abstract, final or empty.	47
	Missing a Javadoc comment.	47
	Parameter uuid should be final.	47
	'uuid' hides a field.	47
	Method 'getReference' is not designed for extension - needs to be abstract, final or empty.	51
	Missing a Javadoc comment.	51
	Method 'setReference' is not designed for extension - needs to be abstract, final or empty.	55
	Missing a Javadoc comment.	55
	Parameter reference should be final.	55
	'reference' hides a field.	55
	Method 'getEntries' is not designed for extension - needs to be abstract, final or empty.	59
	Missing a Javadoc comment.	59
	'=' is not preceded with whitespace.	60
	'=' is not followed by whitespace.	60
	'=' is not preceded with whitespace.	60
	'=' is not followed by whitespace.	60
	'=' is not preceded with whitespace.	62
	'=' is not followed by whitespace.	62
	Method 'setEntries' is not designed for extension - needs to be abstract, final or empty.	67
	Missing a Javadoc comment.	67
	Parameter entries should be final.	67
	'entries' hides a field.	67

org/galaxy/services/beans/TimelineEntry.java

Violation	Message	Line
	Missing a Javadoc comment.	14
	Line has trailing spaces.	15
	Missing a Javadoc comment.	17
	Line has trailing spaces.	18
	Missing a Javadoc comment.	20
	Missing a Javadoc comment.	23
	Line has trailing spaces.	24
	Missing a Javadoc comment.	26
	Line has trailing spaces.	27
	Line has trailing spaces.	30
	Method 'getTitle' is not designed for extension - needs to be abstract, final or empty.	37
	Missing a Javadoc comment.	37
	Method 'setTitle' is not designed for extension - needs to be abstract, final or empty.	41
	Missing a Javadoc comment.	41
	Parameter title should be final.	41
	'title' hides a field.	41
	Method 'getId' is not designed for extension - needs to be abstract, final or empty.	45
	Missing a Javadoc comment.	45
	Method 'setId' is not designed for extension - needs to be abstract, final or empty.	49
	Missing a Javadoc comment.	49
	Parameter id should be final.	49
	'id' hides a field.	49
	Method 'getRevision' is not designed for extension - needs to be abstract, final or empty.	53
	Missing a Javadoc comment.	53
	Method 'setRevision' is not designed for extension - needs to be abstract, final or empty.	57
	Missing a Javadoc comment.	57
	Parameter revision should be final.	57
	'revision' hides a field.	57
	Method 'getTimestamp' is not designed for extension - needs to be abstract, final or empty.	61
	Missing a Javadoc comment.	61
	Method 'setTimestamp' is not designed for extension - needs to be abstract, final or empty.	65
	Missing a Javadoc comment.	65
	Parameter timestamp should be final.	65
	'timestamp' hides a field.	65
	Line has trailing spaces.	68

org/galaxy/services/beans/User.java

Violation	Message	Line
	File does not end with a newline.	0
	'(' is followed by whitespace.	12
	'}' is not preceded with whitespace.	12
	Parameter id should be final.	72
	Method 'getEmail' is not designed for extension - needs to be abstract, final or empty.	76
	Missing a Javadoc comment.	76
	Method 'setEmail' is not designed for extension - needs to be abstract, final or empty.	80
	Missing a Javadoc comment.	80
	Parameter email should be final.	80
	'email' hides a field.	80
	Method 'getPassword' is not designed for extension - needs to be abstract, final or empty.	84
	Missing a Javadoc comment.	84
	Method 'setPassword' is not designed for extension - needs to be abstract, final or empty.	88
	Missing a Javadoc comment.	88
	Parameter password should be final.	88
	'password' hides a field.	88
	Method 'isLocked' is not designed for extension - needs to be abstract, final or empty.	92
	Missing a Javadoc comment.	92
	Method 'setLocked' is not designed for extension - needs to be abstract, final or empty.	96
	Missing a Javadoc comment.	96
	Parameter locked should be final.	96
	'locked' hides a field.	96
	Method 'isAdmin' is not designed for extension - needs to be abstract, final or empty.	100
	Missing a Javadoc comment.	100
	Method 'setAdmin' is not designed for extension - needs to be abstract, final or empty.	104
	Missing a Javadoc comment.	104
	Parameter admin should be final.	104
	'admin' hides a field.	104
	Method 'isDeleted' is not designed for extension - needs to be abstract, final or empty.	108
	Missing a Javadoc comment.	108
	Method 'setDeleted' is not designed for extension - needs to be abstract, final or empty.	112
	Missing a Javadoc comment.	112
	Parameter deleted should be final.	112
	'deleted' hides a field.	112

org/galaxy/services/beans/XmlBean.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	7
	Line has trailing spaces.	15

org/galaxy/services/beans/package-info.java

Violation	Message	Line
	Line has trailing spaces.	4
	Line is longer than 80 characters (found 82).	8

org/galaxy/services/beans/utils/InvalidXmlCharactersAdapter.java

Violation	Message	Line
	File does not end with a newline.	0
	Line has trailing spaces.	13
	Method 'marshal' is not designed for extension - needs to be abstract, final or empty.	19
	Parameter string should be final.	20
	Method 'unmarshal' is not designed for extension - needs to be abstract, final or empty.	24
	Parameter v should be final.	25
	Line has trailing spaces.	28

org/galaxy/services/beans/utils/MapAdapter.java

Violation	Message	Line
	Line has trailing spaces.	23
	Line has trailing spaces.	26
	Method 'marshal' is not designed for extension - needs to be abstract, final or empty.	28
	Parameter map should be final.	29
	Line is longer than 80 characters (found 84).	34
	Line is longer than 80 characters (found 88).	35
	Line has trailing spaces.	42
	Line has trailing spaces.	44
	Line has trailing spaces.	45
	Expected an @return tag.	47
	Method 'unmarshal' is not designed for extension - needs to be abstract, final or empty.	47
	Parameter mapType should be final.	48

org/galaxy/services/beans/utils/MapEntryType.java

Violation	Message	Line
	Line has trailing spaces.	8
	Line has trailing spaces.	16
	Variable 'key' must be private and have accessor methods.	20
	Line has trailing spaces.	21
	Line has trailing spaces.	24
	Variable 'value' must be private and have accessor methods.	28
	Line has trailing spaces.	29

org/galaxy/services/beans/utils/MapType.java

Violation	Message	Line
	Line has trailing spaces.	8
	Line has trailing spaces.	17
	Variable 'entry' must be private and have accessor methods.	21

org/galaxy/services/beans/utils/XMLHelper.java

Violation	Message	Line
	Utility classes should not have a public or default constructor.	12
	Line is longer than 80 characters (found 85).	14
	Missing a Javadoc comment.	14
	Parameter string should be final.	14
	'0x9' is a magic number.	23
	'0xA' is a magic number.	24
	'0xD' is a magic number.	25
	'0x20' is a magic number.	26
	'0xD7FF' is a magic number.	26
	'0xE000' is a magic number.	27
	'0xFFFD' is a magic number.	27
	'0x10000' is a magic number.	28
	'0x10FFFF' is a magic number.	28

org/galaxy/services/beans/utils/package-info.java

Violation	Message	Line
	Line has trailing spaces.	3